Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.51■□□□□ 0.07
RNF4P78317 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
RNF4P78317 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
RNF4P78317 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 PMS2P4-201ENST00000412466 1052 ntBASIC15.51■□□□□ 0.07
RNF4P78317 AC211486.1-202ENST00000416371 468 ntBASIC15.51■□□□□ 0.07
RNF4P78317 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.51■□□□□ 0.07
RNF4P78317 CEND1P1-201ENST00000451006 455 ntBASIC15.51■□□□□ 0.07
RNF4P78317 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 AC211476.1-201ENST00000503899 468 ntBASIC15.51■□□□□ 0.07
RNF4P78317 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.51■□□□□ 0.07
RNF4P78317 AC109635.5-201ENST00000533593 962 ntBASIC15.51■□□□□ 0.07
RNF4P78317 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 MIR3909-201ENST00000579518 119 ntBASIC15.51■□□□□ 0.07
RNF4P78317 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.51■□□□□ 0.07
RNF4P78317 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RNF4P78317 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RNF4P78317 AC080080.1-201ENST00000625121 2420 ntBASIC15.51■□□□□ 0.07
RNF4P78317 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.5■□□□□ 0.07
RNF4P78317 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
RNF4P78317 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.5■□□□□ 0.07
RNF4P78317 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.5■□□□□ 0.07
RNF4P78317 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.5■□□□□ 0.07
RNF4P78317 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.5■□□□□ 0.07
RNF4P78317 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
RNF4P78317 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
RNF4P78317 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RNF4P78317 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.49■□□□□ 0.07
RNF4P78317 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
RNF4P78317 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
RNF4P78317 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.49■□□□□ 0.07
RNF4P78317 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 AL671710.1-201ENST00000610245 2349 ntBASIC15.49■□□□□ 0.07
RNF4P78317 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms