Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS2P54868 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS2P54868 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS2P54868 SNX33P1-201ENST00000592116 1762 ntBASIC19.21■□□□□ 0.67
HMGCS2P54868 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
HMGCS2P54868 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS2P54868 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS2P54868 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
HMGCS2P54868 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGCS2P54868 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGCS2P54868 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HMGCS2P54868 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGCS2P54868 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGCS2P54868 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
HMGCS2P54868 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.2■□□□□ 0.66
HMGCS2P54868 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGCS2P54868 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC19.2■□□□□ 0.66
HMGCS2P54868 AC004840.1-201ENST00000636359 365 ntBASIC19.2■□□□□ 0.66
HMGCS2P54868 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
HMGCS2P54868 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HMGCS2P54868 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 AC007613.1-201ENST00000572811 2597 ntBASIC19.2■□□□□ 0.66
HMGCS2P54868 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGCS2P54868 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGCS2P54868 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGCS2P54868 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS2P54868 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HMGCS2P54868 OR8S1-201ENST00000310194 1080 ntBASIC19.19■□□□□ 0.66
HMGCS2P54868 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.19■□□□□ 0.66
HMGCS2P54868 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS2P54868 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.19■□□□□ 0.66
HMGCS2P54868 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC19.19■□□□□ 0.66
HMGCS2P54868 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS2P54868 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS2P54868 AL132655.2-201ENST00000596276 594 ntBASIC19.19■□□□□ 0.66
HMGCS2P54868 AL133215.2-201ENST00000609242 977 ntBASIC19.19■□□□□ 0.66
HMGCS2P54868 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.19■□□□□ 0.66
HMGCS2P54868 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS2P54868 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS2P54868 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS2P54868 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS2P54868 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS2P54868 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
HMGCS2P54868 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 KRT8P39-201ENST00000396270 1433 ntBASIC19.18■□□□□ 0.66
HMGCS2P54868 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGCS2P54868 AC007541.1-201ENST00000570282 1469 ntBASIC19.18■□□□□ 0.66
HMGCS2P54868 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGCS2P54868 CENPM-206ENST00000407253 818 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.18■□□□□ 0.66
HMGCS2P54868 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC19.18■□□□□ 0.66
HMGCS2P54868 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 AL079307.3-201ENST00000556114 283 ntBASIC19.18■□□□□ 0.66
HMGCS2P54868 PRR29-204ENST00000577953 565 ntTSL 4 BASIC19.18■□□□□ 0.66
HMGCS2P54868 AL008721.1-201ENST00000609964 604 ntBASIC19.18■□□□□ 0.66
HMGCS2P54868 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
HMGCS2P54868 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS2P54868 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms