Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC18.52■□□□□ 0.56
HTTP42858 KLF2P4-201ENST00000451959 1225 ntBASIC18.52■□□□□ 0.56
HTTP42858 AC098859.1-201ENST00000502915 1238 ntBASIC18.52■□□□□ 0.56
HTTP42858 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.52■□□□□ 0.56
HTTP42858 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.52■□□□□ 0.56
HTTP42858 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HTTP42858 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HTTP42858 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.52■□□□□ 0.55
HTTP42858 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.52■□□□□ 0.55
HTTP42858 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HTTP42858 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HTTP42858 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC18.52■□□□□ 0.55
HTTP42858 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HTTP42858 SERBP1P3-201ENST00000459980 809 ntBASIC18.52■□□□□ 0.55
HTTP42858 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.52■□□□□ 0.55
HTTP42858 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.52■□□□□ 0.55
HTTP42858 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HTTP42858 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HTTP42858 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HTTP42858 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HTTP42858 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.51■□□□□ 0.55
HTTP42858 FAM21FP-201ENST00000426241 1131 ntBASIC18.51■□□□□ 0.55
HTTP42858 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
HTTP42858 AC106872.11-201ENST00000605838 421 ntBASIC18.51■□□□□ 0.55
HTTP42858 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HTTP42858 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HTTP42858 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
HTTP42858 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HTTP42858 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HTTP42858 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 AC104457.1-201ENST00000401024 814 ntBASIC18.51■□□□□ 0.55
HTTP42858 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 SDHAP3-202ENST00000515467 728 ntBASIC18.51■□□□□ 0.55
HTTP42858 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC18.51■□□□□ 0.55
HTTP42858 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.51■□□□□ 0.55
HTTP42858 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 KRT43P-201ENST00000434019 910 ntBASIC18.5■□□□□ 0.55
HTTP42858 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.5■□□□□ 0.55
HTTP42858 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.5■□□□□ 0.55
HTTP42858 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.5■□□□□ 0.55
HTTP42858 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.5■□□□□ 0.55
HTTP42858 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HTTP42858 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.5■□□□□ 0.55
HTTP42858 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.5■□□□□ 0.55
HTTP42858 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.5■□□□□ 0.55
HTTP42858 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HTTP42858 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HTTP42858 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HTTP42858 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.5■□□□□ 0.55
HTTP42858 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HTTP42858 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HTTP42858 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.5■□□□□ 0.55
HTTP42858 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.49■□□□□ 0.55
HTTP42858 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.49■□□□□ 0.55
HTTP42858 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.49■□□□□ 0.55
HTTP42858 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.49■□□□□ 0.55
HTTP42858 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.49■□□□□ 0.55
HTTP42858 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.49■□□□□ 0.55
HTTP42858 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HTTP42858 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HTTP42858 SPDYE17-201ENST00000412399 783 ntBASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms