Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HOXC4P09017 AC105020.1-201ENST00000435356 2205 ntBASIC16.25■□□□□ 0.19
HOXC4P09017 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HOXC4P09017 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
HOXC4P09017 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.24■□□□□ 0.19
HOXC4P09017 AC055876.3-201ENST00000431496 288 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
HOXC4P09017 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.24■□□□□ 0.19
HOXC4P09017 DUX4L27-201ENST00000554796 1261 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 AC138649.4-201ENST00000612222 287 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 AC007967.4-201ENST00000614700 386 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 MIR6080-201ENST00000617359 66 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.24■□□□□ 0.19
HOXC4P09017 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 GGT4P-201ENST00000623672 1708 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 AL603756.1-201ENST00000606511 2163 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 AC138932.1-201ENST00000534164 6830 ntBASIC16.24■□□□□ 0.19
HOXC4P09017 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
HOXC4P09017 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.24■□□□□ 0.19
HOXC4P09017 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HOXC4P09017 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.24■□□□□ 0.19
HOXC4P09017 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HOXC4P09017 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HOXC4P09017 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HOXC4P09017 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.23■□□□□ 0.19
HOXC4P09017 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.23■□□□□ 0.19
HOXC4P09017 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 AC125807.1-201ENST00000483097 614 ntBASIC16.23■□□□□ 0.19
HOXC4P09017 RNA5SP421-201ENST00000516864 134 ntBASIC16.23■□□□□ 0.19
HOXC4P09017 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.23■□□□□ 0.19
HOXC4P09017 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HOXC4P09017 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HOXC4P09017 AC005498.2-205ENST00000593218 784 ntBASIC16.23■□□□□ 0.19
HOXC4P09017 AC011467.4-201ENST00000594891 528 ntBASIC16.23■□□□□ 0.19
HOXC4P09017 AL096865.1-201ENST00000606796 927 ntBASIC16.23■□□□□ 0.19
HOXC4P09017 AL158211.3-201ENST00000607385 239 ntBASIC16.23■□□□□ 0.19
HOXC4P09017 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
HOXC4P09017 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.23■□□□□ 0.19
HOXC4P09017 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC4P09017 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HOXC4P09017 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HOXC4P09017 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms