Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 HLA-A-202ENST00000376806 1854 ntBASIC16.11■□□□□ 0.17
SEMA3DO95025 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SEMA3DO95025 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.11■□□□□ 0.17
SEMA3DO95025 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
SEMA3DO95025 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.1■□□□□ 0.17
SEMA3DO95025 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 AC104692.2-201ENST00000603054 253 ntBASIC16.1■□□□□ 0.17
SEMA3DO95025 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 AL773604.1-201ENST00000617417 272 ntBASIC16.1■□□□□ 0.17
SEMA3DO95025 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 AC129492.6-201ENST00000611383 1305 ntBASIC16.1■□□□□ 0.17
SEMA3DO95025 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.1■□□□□ 0.17
SEMA3DO95025 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.1■□□□□ 0.17
SEMA3DO95025 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
SEMA3DO95025 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SEMA3DO95025 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.1■□□□□ 0.17
SEMA3DO95025 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SEMA3DO95025 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.09■□□□□ 0.17
SEMA3DO95025 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 AC006538.1-201ENST00000567905 1585 ntBASIC16.09■□□□□ 0.17
SEMA3DO95025 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SEMA3DO95025 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
SEMA3DO95025 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.09■□□□□ 0.17
SEMA3DO95025 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.09■□□□□ 0.17
SEMA3DO95025 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.09■□□□□ 0.17
SEMA3DO95025 AC107918.2-201ENST00000530817 355 ntBASIC16.09■□□□□ 0.17
SEMA3DO95025 AL160237.2-201ENST00000556165 472 ntBASIC16.09■□□□□ 0.17
SEMA3DO95025 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.09■□□□□ 0.17
SEMA3DO95025 AC012640.2-201ENST00000561606 901 ntBASIC16.09■□□□□ 0.17
SEMA3DO95025 MIR4492-201ENST00000581627 80 ntBASIC16.09■□□□□ 0.17
SEMA3DO95025 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms