Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 AC138627.1-207ENST00000641560 1006 ntBASIC16.09■□□□□ 0.17
GFRA3O60609 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
GFRA3O60609 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.09■□□□□ 0.17
GFRA3O60609 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
GFRA3O60609 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.09■□□□□ 0.17
GFRA3O60609 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.09■□□□□ 0.17
GFRA3O60609 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.09■□□□□ 0.17
GFRA3O60609 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.09■□□□□ 0.17
GFRA3O60609 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
GFRA3O60609 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
GFRA3O60609 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.08■□□□□ 0.17
GFRA3O60609 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.08■□□□□ 0.17
GFRA3O60609 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
GFRA3O60609 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.08■□□□□ 0.17
GFRA3O60609 AC073439.1-201ENST00000624121 1774 ntBASIC16.08■□□□□ 0.17
GFRA3O60609 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.08■□□□□ 0.17
GFRA3O60609 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.08■□□□□ 0.16
GFRA3O60609 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 MAGEA5-201ENST00000446757 942 ntBASIC16.08■□□□□ 0.16
GFRA3O60609 BX284668.4-201ENST00000453917 508 ntBASIC16.08■□□□□ 0.16
GFRA3O60609 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.08■□□□□ 0.16
GFRA3O60609 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.08■□□□□ 0.16
GFRA3O60609 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.08■□□□□ 0.16
GFRA3O60609 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.08■□□□□ 0.16
GFRA3O60609 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.08■□□□□ 0.16
GFRA3O60609 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.08■□□□□ 0.16
GFRA3O60609 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.08■□□□□ 0.16
GFRA3O60609 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.08■□□□□ 0.16
GFRA3O60609 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
GFRA3O60609 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.08■□□□□ 0.16
GFRA3O60609 RHOXF1P1-202ENST00000635473 501 ntBASIC16.08■□□□□ 0.16
GFRA3O60609 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
GFRA3O60609 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.08■□□□□ 0.16
GFRA3O60609 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
GFRA3O60609 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
GFRA3O60609 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.08■□□□□ 0.16
GFRA3O60609 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
GFRA3O60609 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.07■□□□□ 0.16
GFRA3O60609 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.07■□□□□ 0.16
GFRA3O60609 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
GFRA3O60609 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.07■□□□□ 0.16
GFRA3O60609 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.07■□□□□ 0.16
GFRA3O60609 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
GFRA3O60609 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.07■□□□□ 0.16
GFRA3O60609 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.07■□□□□ 0.16
GFRA3O60609 FTLP1-201ENST00000449155 526 ntBASIC16.07■□□□□ 0.16
GFRA3O60609 Z93015.1-201ENST00000451718 390 ntBASIC16.07■□□□□ 0.16
GFRA3O60609 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 HIST2H2BC-201ENST00000498492 580 ntBASIC16.07■□□□□ 0.16
GFRA3O60609 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.07■□□□□ 0.16
GFRA3O60609 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.07■□□□□ 0.16
GFRA3O60609 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
GFRA3O60609 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.07■□□□□ 0.16
GFRA3O60609 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.07■□□□□ 0.16
GFRA3O60609 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.07■□□□□ 0.16
GFRA3O60609 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
GFRA3O60609 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
GFRA3O60609 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
GFRA3O60609 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.06■□□□□ 0.16
GFRA3O60609 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
GFRA3O60609 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.06■□□□□ 0.16
GFRA3O60609 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.06■□□□□ 0.16
GFRA3O60609 BX323043.1-201ENST00000641006 1765 ntBASIC16.06■□□□□ 0.16
GFRA3O60609 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
GFRA3O60609 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.06■□□□□ 0.16
GFRA3O60609 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
GFRA3O60609 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
GFRA3O60609 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.06■□□□□ 0.16
GFRA3O60609 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.06■□□□□ 0.16
GFRA3O60609 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
GFRA3O60609 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
GFRA3O60609 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms