Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 AC131009.4-201ENST00000624048 1740 ntBASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM39Q9HCM9 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SLC22A20-204ENST00000530038 1673 ntBASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 AP001350.2-201ENST00000625104 1094 ntBASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 AC022211.2-201ENST00000585075 2527 ntBASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TRIM39Q9HCM9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 AL391005.1-201ENST00000623953 2435 ntBASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 KRT18P13-201ENST00000400056 1290 ntBASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 AC087641.1-201ENST00000557561 1021 ntBASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 MIR3687-2-201ENST00000577708 61 ntBASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 MIR3687-1-201ENST00000614492 61 ntBASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM39Q9HCM9 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms