Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 CXCL1P1-201ENST00000502804 216 ntBASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 AC023141.13-201ENST00000604991 943 ntBASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CLIP3Q96DZ5 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 PDPK2P-202ENST00000562415 1191 ntBASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 C20orf181-201ENST00000623918 480 ntBASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 AC025580.3-201ENST00000617932 1424 ntBASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.26■□□□□ 0.19
CLIP3Q96DZ5 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 FLJ16779-201ENST00000612722 7638 ntBASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 PCDH8P1-201ENST00000428983 2773 ntBASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 ALG1L5P-201ENST00000482043 771 ntBASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 KRT19P2-202ENST00000557173 1012 ntBASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 AL078644.1-201ENST00000609881 752 ntBASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.25■□□□□ 0.19
CLIP3Q96DZ5 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 LINC00896-202ENST00000609602 2128 ntBASIC16.24■□□□□ 0.19
CLIP3Q96DZ5 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms