Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 AL391005.1-201ENST00000623953 2435 ntBASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 AC040169.1-201ENST00000565382 521 ntBASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 AC004877.2-201ENST00000623941 599 ntBASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
CHMP4CQ96CF2 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CHMP4CQ96CF2 AC092068.3-201ENST00000587894 2016 ntBASIC20.02■□□□□ 0.79
CHMP4CQ96CF2 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
CHMP4CQ96CF2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CHMP4CQ96CF2 BCAR1-209ENST00000546196 1340 ntBASIC20.02■□□□□ 0.79
CHMP4CQ96CF2 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 SLC25A6P2-201ENST00000497974 877 ntBASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 AL078644.1-201ENST00000609881 752 ntBASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP4CQ96CF2 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 NFIC-211ENST00000641145 8399 ntBASIC20■□□□□ 0.79
CHMP4CQ96CF2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 RPSAP43-201ENST00000402237 625 ntBASIC20■□□□□ 0.79
CHMP4CQ96CF2 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 AC010654.1-201ENST00000615722 808 ntBASIC20■□□□□ 0.79
CHMP4CQ96CF2 AL691403.2-201ENST00000618460 490 ntBASIC20■□□□□ 0.79
CHMP4CQ96CF2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
CHMP4CQ96CF2 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP4CQ96CF2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4CQ96CF2 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms