Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 AC104640.1-201ENST00000562617 2109 ntBASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 MIR3652-201ENST00000579335 131 ntBASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 CLEC4GP1-201ENST00000596555 870 ntBASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 AC009154.2-201ENST00000621177 724 ntBASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 KRT8P26-201ENST00000534154 1276 ntBASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AL136038.4-201ENST00000603606 1261 ntBASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AL391256.1-201ENST00000443260 1855 ntBASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 AC092384.3-202ENST00000564646 2873 ntBASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 EGFEM1P-202ENST00000431685 1563 ntBASIC15.62■□□□□ 0.09
ZNF540Q8NDQ6 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 KRT89P-201ENST00000620027 1478 ntBASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 HLA-F-220ENST00000434407 884 ntBASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 DUSP5P1-201ENST00000441325 1139 ntBASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 AC024563.2-201ENST00000603282 481 ntBASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
ZNF540Q8NDQ6 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms