Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 AC027796.2-201ENST00000575326 344 ntBASIC15.6■□□□□ 0.09
BEST3Q8N1M1 AC005412.3-201ENST00000580309 715 ntBASIC15.6■□□□□ 0.09
BEST3Q8N1M1 MIR4515-201ENST00000584082 81 ntBASIC15.6■□□□□ 0.09
BEST3Q8N1M1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 PKD1P5-201ENST00000532415 10291 ntBASIC15.6■□□□□ 0.09
BEST3Q8N1M1 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
BEST3Q8N1M1 AL139384.1-201ENST00000612143 3047 ntBASIC15.6■□□□□ 0.09
BEST3Q8N1M1 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 AC108860.2-201ENST00000562760 2183 ntBASIC15.59■□□□□ 0.09
BEST3Q8N1M1 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 AC140658.5-201ENST00000438532 169 ntBASIC15.59■□□□□ 0.09
BEST3Q8N1M1 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 AC027612.4-201ENST00000605371 583 ntBASIC15.59■□□□□ 0.09
BEST3Q8N1M1 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.59■□□□□ 0.09
BEST3Q8N1M1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.09
BEST3Q8N1M1 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.58■□□□□ 0.09
BEST3Q8N1M1 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
BEST3Q8N1M1 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BEST3Q8N1M1 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
BEST3Q8N1M1 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BEST3Q8N1M1 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BEST3Q8N1M1 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AC116353.5-201ENST00000638148 1699 ntBASIC15.58■□□□□ 0.08
BEST3Q8N1M1 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.58■□□□□ 0.08
BEST3Q8N1M1 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AL513210.1-201ENST00000629608 234 ntBASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AC105339.1-204ENST00000636249 355 ntBASIC15.58■□□□□ 0.08
BEST3Q8N1M1 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.58■□□□□ 0.08
BEST3Q8N1M1 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms