Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
PDLIM3Q53GG5 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 PCDHB19P-201ENST00000570871 2371 ntBASIC14□□□□□ -0.17
PDLIM3Q53GG5 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 AL591424.1-201ENST00000442569 1213 ntBASIC14□□□□□ -0.17
PDLIM3Q53GG5 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 AC011467.4-201ENST00000594891 528 ntBASIC14□□□□□ -0.17
PDLIM3Q53GG5 AL049840.3-201ENST00000602669 611 ntBASIC14□□□□□ -0.17
PDLIM3Q53GG5 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
PDLIM3Q53GG5 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14□□□□□ -0.17
PDLIM3Q53GG5 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 AL353692.3-201ENST00000407031 1396 ntBASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms