Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 TDH-203ENST00000531764 1110 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 AC036164.1-201ENST00000570544 333 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 DEK-201ENST00000244776 1441 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 AC004898.1-201ENST00000451057 766 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 CFL1-214ENST00000534769 758 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC10.19□□□□□ -0.78
HSPG2P98160 ACTG1P3-201ENST00000431775 1114 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC10.19□□□□□ -0.78
HSPG2P98160 AC104306.2-201ENST00000451877 341 ntBASIC10.19□□□□□ -0.78
HSPG2P98160 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC10.19□□□□□ -0.78
HSPG2P98160 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC10.19□□□□□ -0.78
HSPG2P98160 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
HSPG2P98160 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
HSPG2P98160 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC10.18□□□□□ -0.78
HSPG2P98160 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 UPF3AP2-201ENST00000457924 1132 ntBASIC10.18□□□□□ -0.78
HSPG2P98160 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC10.18□□□□□ -0.78
HSPG2P98160 MIR6756-201ENST00000616240 63 ntBASIC10.18□□□□□ -0.78
HSPG2P98160 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC10.18□□□□□ -0.78
HSPG2P98160 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
HSPG2P98160 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC10.18□□□□□ -0.78
HSPG2P98160 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC10.18□□□□□ -0.78
HSPG2P98160 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
HSPG2P98160 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC10.18□□□□□ -0.78
HSPG2P98160 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC10.18□□□□□ -0.78
HSPG2P98160 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
HSPG2P98160 MGST3-203ENST00000367885 680 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC10.18□□□□□ -0.78
HSPG2P98160 HIST3H2BA-201ENST00000436555 524 ntBASIC10.18□□□□□ -0.78
HSPG2P98160 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC10.18□□□□□ -0.78
HSPG2P98160 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC10.18□□□□□ -0.78
HSPG2P98160 HNRNPA1P13-201ENST00000510646 963 ntBASIC10.18□□□□□ -0.78
HSPG2P98160 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC10.18□□□□□ -0.78
HSPG2P98160 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 ATF5-205ENST00000600336 682 ntTSL 2 BASIC10.18□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms