Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.99■□□□□ 0.47
VCPP55072 AGGF1P2-201ENST00000426656 2106 ntBASIC17.99■□□□□ 0.47
VCPP55072 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
VCPP55072 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.99■□□□□ 0.47
VCPP55072 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
VCPP55072 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.99■□□□□ 0.47
VCPP55072 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.99■□□□□ 0.47
VCPP55072 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.99■□□□□ 0.47
VCPP55072 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.99■□□□□ 0.47
VCPP55072 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VCPP55072 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.99■□□□□ 0.47
VCPP55072 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.99■□□□□ 0.47
VCPP55072 INGX-202ENST00000489074 768 ntBASIC17.99■□□□□ 0.47
VCPP55072 TERF1P3-201ENST00000505638 1227 ntBASIC17.99■□□□□ 0.47
VCPP55072 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.99■□□□□ 0.47
VCPP55072 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.99■□□□□ 0.47
VCPP55072 AC008667.4-201ENST00000607370 168 ntBASIC17.99■□□□□ 0.47
VCPP55072 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
VCPP55072 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.99■□□□□ 0.47
VCPP55072 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.99■□□□□ 0.47
VCPP55072 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
VCPP55072 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 AC097637.2-201ENST00000624096 1997 ntBASIC17.99■□□□□ 0.47
VCPP55072 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCPP55072 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.98■□□□□ 0.47
VCPP55072 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.98■□□□□ 0.47
VCPP55072 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.98■□□□□ 0.47
VCPP55072 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
VCPP55072 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 AC002472.2-201ENST00000442739 958 ntBASIC17.98■□□□□ 0.47
VCPP55072 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.98■□□□□ 0.47
VCPP55072 AC023141.5-201ENST00000458585 616 ntBASIC17.98■□□□□ 0.47
VCPP55072 RPS15P9-201ENST00000494093 319 ntBASIC17.98■□□□□ 0.47
VCPP55072 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.98■□□□□ 0.47
VCPP55072 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.98■□□□□ 0.47
VCPP55072 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.98■□□□□ 0.47
VCPP55072 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
VCPP55072 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.98■□□□□ 0.47
VCPP55072 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 NCF1C-201ENST00000438382 1427 ntBASIC17.98■□□□□ 0.47
VCPP55072 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
VCPP55072 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCPP55072 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.97■□□□□ 0.47
VCPP55072 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.97■□□□□ 0.47
VCPP55072 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VCPP55072 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.97■□□□□ 0.47
VCPP55072 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCPP55072 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms