Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.46■□□□□ 0.39
EPHB3P54753 TREML5P-201ENST00000421694 576 ntBASIC17.46■□□□□ 0.39
EPHB3P54753 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.46■□□□□ 0.39
EPHB3P54753 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 AC069120.2-201ENST00000524091 540 ntBASIC17.46■□□□□ 0.39
EPHB3P54753 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.46■□□□□ 0.39
EPHB3P54753 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.46■□□□□ 0.39
EPHB3P54753 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.46■□□□□ 0.39
EPHB3P54753 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.46■□□□□ 0.39
EPHB3P54753 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.46■□□□□ 0.39
EPHB3P54753 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
EPHB3P54753 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
EPHB3P54753 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.46■□□□□ 0.39
EPHB3P54753 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
EPHB3P54753 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
EPHB3P54753 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
EPHB3P54753 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.45■□□□□ 0.38
EPHB3P54753 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.45■□□□□ 0.38
EPHB3P54753 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.45■□□□□ 0.38
EPHB3P54753 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.45■□□□□ 0.38
EPHB3P54753 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 PRYP6-201ENST00000514804 343 ntBASIC17.45■□□□□ 0.38
EPHB3P54753 MIR4453-201ENST00000584019 89 ntBASIC17.45■□□□□ 0.38
EPHB3P54753 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 AC073389.1-201ENST00000595595 795 ntBASIC17.45■□□□□ 0.38
EPHB3P54753 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.45■□□□□ 0.38
EPHB3P54753 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.45■□□□□ 0.38
EPHB3P54753 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 AC092068.3-201ENST00000587894 2016 ntBASIC17.45■□□□□ 0.38
EPHB3P54753 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
EPHB3P54753 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
EPHB3P54753 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
EPHB3P54753 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
EPHB3P54753 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.44■□□□□ 0.38
EPHB3P54753 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
EPHB3P54753 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.44■□□□□ 0.38
EPHB3P54753 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
EPHB3P54753 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 AC142381.1-201ENST00000426099 345 ntBASIC17.44■□□□□ 0.38
EPHB3P54753 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.44■□□□□ 0.38
EPHB3P54753 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.44■□□□□ 0.38
EPHB3P54753 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.44■□□□□ 0.38
EPHB3P54753 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 AL158211.3-201ENST00000607385 239 ntBASIC17.44■□□□□ 0.38
EPHB3P54753 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.44■□□□□ 0.38
EPHB3P54753 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.44■□□□□ 0.38
EPHB3P54753 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.44■□□□□ 0.38
EPHB3P54753 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
EPHB3P54753 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms