Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
COL18A1P39060 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC21.76■■□□□ 1.07
COL18A1P39060 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
COL18A1P39060 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
COL18A1P39060 AP005482.1-201ENST00000563722 1273 ntBASIC21.76■■□□□ 1.07
COL18A1P39060 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC21.76■■□□□ 1.07
COL18A1P39060 AC074044.1-201ENST00000609673 707 ntBASIC21.76■■□□□ 1.07
COL18A1P39060 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL18A1P39060 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC21.75■■□□□ 1.07
COL18A1P39060 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL18A1P39060 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC21.75■■□□□ 1.07
COL18A1P39060 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC21.75■■□□□ 1.07
COL18A1P39060 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC21.75■■□□□ 1.07
COL18A1P39060 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC21.75■■□□□ 1.07
COL18A1P39060 AC010319.3-201ENST00000597028 470 ntBASIC21.75■■□□□ 1.07
COL18A1P39060 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
COL18A1P39060 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL18A1P39060 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.75■■□□□ 1.07
COL18A1P39060 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL18A1P39060 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
COL18A1P39060 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
COL18A1P39060 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 EEF1DP4-201ENST00000446006 880 ntBASIC21.74■■□□□ 1.07
COL18A1P39060 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC21.74■■□□□ 1.07
COL18A1P39060 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC21.74■■□□□ 1.07
COL18A1P39060 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
COL18A1P39060 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC21.74■■□□□ 1.07
COL18A1P39060 TMEM261P1-201ENST00000604899 340 ntBASIC21.74■■□□□ 1.07
COL18A1P39060 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC21.74■■□□□ 1.07
COL18A1P39060 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL18A1P39060 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL18A1P39060 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL18A1P39060 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC21.74■■□□□ 1.07
COL18A1P39060 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 MPV17-208ENST00000405076 603 ntTSL 5 BASIC21.74■■□□□ 1.07
COL18A1P39060 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL18A1P39060 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC21.74■■□□□ 1.07
COL18A1P39060 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC21.74■■□□□ 1.07
COL18A1P39060 AC234783.1-201ENST00000441761 496 ntBASIC21.74■■□□□ 1.07
COL18A1P39060 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC21.74■■□□□ 1.07
COL18A1P39060 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC21.74■■□□□ 1.07
COL18A1P39060 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
COL18A1P39060 AC026979.3-201ENST00000607315 403 ntBASIC21.74■■□□□ 1.07
COL18A1P39060 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.74■■□□□ 1.07
COL18A1P39060 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
COL18A1P39060 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
COL18A1P39060 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC21.73■■□□□ 1.07
COL18A1P39060 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC21.73■■□□□ 1.07
COL18A1P39060 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC21.73■■□□□ 1.07
COL18A1P39060 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC21.73■■□□□ 1.07
COL18A1P39060 AC020765.3-201ENST00000613051 740 ntBASIC21.73■■□□□ 1.07
COL18A1P39060 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
COL18A1P39060 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.73■■□□□ 1.07
COL18A1P39060 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL18A1P39060 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
COL18A1P39060 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
COL18A1P39060 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC21.72■■□□□ 1.07
COL18A1P39060 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms