Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.61■□□□□ 0.41
APOEP02649 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.61■□□□□ 0.41
APOEP02649 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.6■□□□□ 0.41
APOEP02649 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
APOEP02649 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
APOEP02649 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.6■□□□□ 0.41
APOEP02649 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
APOEP02649 TNRC18P3-201ENST00000441896 2691 ntBASIC17.6■□□□□ 0.41
APOEP02649 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.6■□□□□ 0.41
APOEP02649 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.6■□□□□ 0.41
APOEP02649 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.6■□□□□ 0.41
APOEP02649 FAM185BP-201ENST00000443595 716 ntBASIC17.6■□□□□ 0.41
APOEP02649 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.6■□□□□ 0.41
APOEP02649 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.6■□□□□ 0.41
APOEP02649 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.6■□□□□ 0.41
APOEP02649 REXO1L3P-201ENST00000622202 1288 ntBASIC17.6■□□□□ 0.41
APOEP02649 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.6■□□□□ 0.41
APOEP02649 TUBB8P12-201ENST00000308911 1335 ntBASIC17.6■□□□□ 0.41
APOEP02649 TUBB7P-202ENST00000428444 1305 ntBASIC17.6■□□□□ 0.41
APOEP02649 TUBB8P7-204ENST00000567960 1332 ntBASIC17.6■□□□□ 0.41
APOEP02649 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.6■□□□□ 0.41
APOEP02649 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.6■□□□□ 0.41
APOEP02649 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
APOEP02649 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
APOEP02649 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
APOEP02649 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.59■□□□□ 0.41
APOEP02649 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
APOEP02649 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.59■□□□□ 0.41
APOEP02649 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.59■□□□□ 0.41
APOEP02649 TOP3BP1-201ENST00000420768 1380 ntBASIC17.59■□□□□ 0.41
APOEP02649 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 KRT18P2-201ENST00000447938 1258 ntBASIC17.59■□□□□ 0.41
APOEP02649 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.59■□□□□ 0.41
APOEP02649 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.59■□□□□ 0.41
APOEP02649 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.59■□□□□ 0.41
APOEP02649 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.59■□□□□ 0.41
APOEP02649 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.59■□□□□ 0.41
APOEP02649 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.59■□□□□ 0.41
APOEP02649 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.59■□□□□ 0.41
APOEP02649 AC007064.4-201ENST00000637740 555 ntBASIC17.59■□□□□ 0.41
APOEP02649 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
APOEP02649 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
APOEP02649 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.59■□□□□ 0.41
APOEP02649 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.59■□□□□ 0.41
APOEP02649 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
APOEP02649 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.41
APOEP02649 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
APOEP02649 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
APOEP02649 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
APOEP02649 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
APOEP02649 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.58■□□□□ 0.41
APOEP02649 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.58■□□□□ 0.41
APOEP02649 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.58■□□□□ 0.41
APOEP02649 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
APOEP02649 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
APOEP02649 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.58■□□□□ 0.41
APOEP02649 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.58■□□□□ 0.41
APOEP02649 KRT8P49-201ENST00000604166 1432 ntBASIC17.58■□□□□ 0.41
APOEP02649 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
APOEP02649 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
APOEP02649 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
APOEP02649 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
APOEP02649 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.58■□□□□ 0.4
APOEP02649 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms