Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CACNA1FO60840 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.88■□□□□ 0.93
CACNA1FO60840 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CACNA1FO60840 AL645939.2-201ENST00000427340 991 ntBASIC20.88■□□□□ 0.93
CACNA1FO60840 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 AC005237.2-201ENST00000434368 219 ntBASIC20.88■□□□□ 0.93
CACNA1FO60840 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 RBPMS2P1-201ENST00000437762 623 ntBASIC20.88■□□□□ 0.93
CACNA1FO60840 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.88■□□□□ 0.93
CACNA1FO60840 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.88■□□□□ 0.93
CACNA1FO60840 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CACNA1FO60840 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.88■□□□□ 0.93
CACNA1FO60840 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.88■□□□□ 0.93
CACNA1FO60840 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.88■□□□□ 0.93
CACNA1FO60840 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CACNA1FO60840 AC008677.1-201ENST00000519230 1561 ntBASIC20.87■□□□□ 0.93
CACNA1FO60840 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CACNA1FO60840 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC20.87■□□□□ 0.93
CACNA1FO60840 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.87■□□□□ 0.93
CACNA1FO60840 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CACNA1FO60840 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.87■□□□□ 0.93
CACNA1FO60840 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CACNA1FO60840 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CACNA1FO60840 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.86■□□□□ 0.93
CACNA1FO60840 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.86■□□□□ 0.93
CACNA1FO60840 AC069120.2-201ENST00000524091 540 ntBASIC20.86■□□□□ 0.93
CACNA1FO60840 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC20.86■□□□□ 0.93
CACNA1FO60840 RFPL4AP1-201ENST00000530883 850 ntBASIC20.86■□□□□ 0.93
CACNA1FO60840 AL512356.2-201ENST00000546955 174 ntBASIC20.86■□□□□ 0.93
CACNA1FO60840 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.86■□□□□ 0.93
CACNA1FO60840 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.86■□□□□ 0.93
CACNA1FO60840 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.86■□□□□ 0.93
CACNA1FO60840 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
CACNA1FO60840 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CACNA1FO60840 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 AL080243.2-201ENST00000418783 582 ntBASIC20.86■□□□□ 0.93
CACNA1FO60840 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.86■□□□□ 0.93
CACNA1FO60840 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.86■□□□□ 0.93
CACNA1FO60840 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1FO60840 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC20.85■□□□□ 0.93
CACNA1FO60840 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
CACNA1FO60840 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.85■□□□□ 0.93
CACNA1FO60840 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.85■□□□□ 0.93
CACNA1FO60840 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.85■□□□□ 0.93
CACNA1FO60840 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC20.85■□□□□ 0.93
CACNA1FO60840 AJ011932.1-201ENST00000621707 465 ntBASIC20.85■□□□□ 0.93
CACNA1FO60840 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CACNA1FO60840 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.85■□□□□ 0.93
CACNA1FO60840 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.85■□□□□ 0.93
CACNA1FO60840 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.85■□□□□ 0.93
CACNA1FO60840 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1FO60840 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.85■□□□□ 0.93
CACNA1FO60840 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CACNA1FO60840 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CACNA1FO60840 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.85■□□□□ 0.93
CACNA1FO60840 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.85■□□□□ 0.93
CACNA1FO60840 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.85■□□□□ 0.93
CACNA1FO60840 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms