Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.81□□□□□ -0.04
LMX1BO60663 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LMX1BO60663 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LMX1BO60663 INIP-202ENST00000374236 874 ntTSL 2 BASIC14.81□□□□□ -0.04
LMX1BO60663 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.81□□□□□ -0.04
LMX1BO60663 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.81□□□□□ -0.04
LMX1BO60663 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.81□□□□□ -0.04
LMX1BO60663 RPS2P1-201ENST00000434010 821 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 AL591424.1-201ENST00000442569 1213 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 ABCD1P5-201ENST00000445663 754 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 AC092910.1-201ENST00000482027 1129 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 PGAM5P1-201ENST00000518923 814 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 IGHV3-22-201ENST00000520721 359 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.81□□□□□ -0.04
LMX1BO60663 OR7E14P-202ENST00000530490 1290 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.81□□□□□ -0.04
LMX1BO60663 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.81□□□□□ -0.04
LMX1BO60663 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.81□□□□□ -0.04
LMX1BO60663 AC140113.2-201ENST00000604370 208 ntBASIC14.81□□□□□ -0.04
LMX1BO60663 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.81□□□□□ -0.04
LMX1BO60663 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.81□□□□□ -0.04
LMX1BO60663 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
LMX1BO60663 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.81□□□□□ -0.04
LMX1BO60663 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.81□□□□□ -0.04
LMX1BO60663 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.8□□□□□ -0.04
LMX1BO60663 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 UPF3AP3-201ENST00000420996 769 ntBASIC14.8□□□□□ -0.04
LMX1BO60663 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
LMX1BO60663 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.8□□□□□ -0.04
LMX1BO60663 DUX4L17-201ENST00000557360 1267 ntBASIC14.8□□□□□ -0.04
LMX1BO60663 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 AL356488.2-201ENST00000602755 427 ntBASIC14.8□□□□□ -0.04
LMX1BO60663 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.8□□□□□ -0.04
LMX1BO60663 AL139384.1-201ENST00000612143 3047 ntBASIC14.8□□□□□ -0.04
LMX1BO60663 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LMX1BO60663 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 AL356309.3-201ENST00000624132 1934 ntBASIC14.8□□□□□ -0.04
LMX1BO60663 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.8□□□□□ -0.04
LMX1BO60663 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LMX1BO60663 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC14.79□□□□□ -0.04
LMX1BO60663 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LMX1BO60663 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LMX1BO60663 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LMX1BO60663 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms