Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKNO60260 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKNO60260 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.62■□□□□ 0.09
PRKNO60260 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
PRKNO60260 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.62■□□□□ 0.09
PRKNO60260 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.62■□□□□ 0.09
PRKNO60260 AP002472.1-201ENST00000577490 586 ntBASIC15.62■□□□□ 0.09
PRKNO60260 MPDU1-223ENST00000582151 728 ntBASIC15.62■□□□□ 0.09
PRKNO60260 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.62■□□□□ 0.09
PRKNO60260 AC068137.2-201ENST00000605408 478 ntBASIC15.62■□□□□ 0.09
PRKNO60260 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.62■□□□□ 0.09
PRKNO60260 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.62■□□□□ 0.09
PRKNO60260 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKNO60260 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKNO60260 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKNO60260 AL021920.2-201ENST00000624828 1351 ntBASIC15.62■□□□□ 0.09
PRKNO60260 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.62■□□□□ 0.09
PRKNO60260 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PRKNO60260 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PRKNO60260 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
PRKNO60260 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 AGGF1P2-201ENST00000426656 2106 ntBASIC15.61■□□□□ 0.09
PRKNO60260 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.61■□□□□ 0.09
PRKNO60260 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PRKNO60260 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.61■□□□□ 0.09
PRKNO60260 AL603756.1-201ENST00000606511 2163 ntBASIC15.61■□□□□ 0.09
PRKNO60260 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PRKNO60260 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PRKNO60260 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
PRKNO60260 FAM58CP-201ENST00000435741 640 ntBASIC15.61■□□□□ 0.09
PRKNO60260 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.61■□□□□ 0.09
PRKNO60260 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.61■□□□□ 0.09
PRKNO60260 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.61■□□□□ 0.09
PRKNO60260 MIR3687-2-201ENST00000577708 61 ntBASIC15.61■□□□□ 0.09
PRKNO60260 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
PRKNO60260 MIR3687-1-201ENST00000614492 61 ntBASIC15.61■□□□□ 0.09
PRKNO60260 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 AC091812.2-201ENST00000619081 385 ntBASIC15.61■□□□□ 0.09
PRKNO60260 C20orf181-201ENST00000623918 480 ntBASIC15.61■□□□□ 0.09
PRKNO60260 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PRKNO60260 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
PRKNO60260 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.61■□□□□ 0.09
PRKNO60260 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.61■□□□□ 0.09
PRKNO60260 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PRKNO60260 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
PRKNO60260 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.6■□□□□ 0.09
PRKNO60260 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.6■□□□□ 0.09
PRKNO60260 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
PRKNO60260 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
PRKNO60260 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PRKNO60260 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PRKNO60260 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKNO60260 AC012569.1-201ENST00000591191 1524 ntBASIC15.6■□□□□ 0.09
PRKNO60260 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.6■□□□□ 0.09
PRKNO60260 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.6■□□□□ 0.09
PRKNO60260 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.6■□□□□ 0.09
PRKNO60260 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.6■□□□□ 0.09
PRKNO60260 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.6■□□□□ 0.09
PRKNO60260 HTR5BP-201ENST00000430851 1154 ntBASIC15.6■□□□□ 0.09
PRKNO60260 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
PRKNO60260 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PRKNO60260 AL031432.2-201ENST00000566714 459 ntBASIC15.6■□□□□ 0.09
PRKNO60260 AC005829.1-201ENST00000570002 483 ntBASIC15.6■□□□□ 0.09
PRKNO60260 AL928711.1-201ENST00000570165 459 ntBASIC15.6■□□□□ 0.09
PRKNO60260 AL645728.2-201ENST00000641974 660 ntBASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms