Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
HOXC11O43248 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.02■□□□□ 0.32
HOXC11O43248 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.02■□□□□ 0.32
HOXC11O43248 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.02■□□□□ 0.32
HOXC11O43248 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.02■□□□□ 0.32
HOXC11O43248 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.02■□□□□ 0.32
HOXC11O43248 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.02■□□□□ 0.32
HOXC11O43248 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.02■□□□□ 0.32
HOXC11O43248 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.02■□□□□ 0.32
HOXC11O43248 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
HOXC11O43248 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 PP12613-201ENST00000424958 2230 ntBASIC17.02■□□□□ 0.32
HOXC11O43248 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC11O43248 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
HOXC11O43248 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC11O43248 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.02■□□□□ 0.31
HOXC11O43248 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HOXC11O43248 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HOXC11O43248 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.01■□□□□ 0.31
HOXC11O43248 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.01■□□□□ 0.31
HOXC11O43248 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 TREML5P-201ENST00000421694 576 ntBASIC17.01■□□□□ 0.31
HOXC11O43248 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.01■□□□□ 0.31
HOXC11O43248 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.01■□□□□ 0.31
HOXC11O43248 INGX-202ENST00000489074 768 ntBASIC17.01■□□□□ 0.31
HOXC11O43248 PRYP6-201ENST00000514804 343 ntBASIC17.01■□□□□ 0.31
HOXC11O43248 AC069120.2-201ENST00000524091 540 ntBASIC17.01■□□□□ 0.31
HOXC11O43248 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.01■□□□□ 0.31
HOXC11O43248 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.01■□□□□ 0.31
HOXC11O43248 RARRES2P9-201ENST00000565168 469 ntBASIC17.01■□□□□ 0.31
HOXC11O43248 MIR4745-201ENST00000577608 62 ntBASIC17.01■□□□□ 0.31
HOXC11O43248 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC11O43248 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
HOXC11O43248 KRT8P39-201ENST00000396270 1433 ntBASIC17.01■□□□□ 0.31
HOXC11O43248 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.01■□□□□ 0.31
HOXC11O43248 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HOXC11O43248 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.01■□□□□ 0.31
HOXC11O43248 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HOXC11O43248 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC11O43248 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17■□□□□ 0.31
HOXC11O43248 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 SNX33P1-201ENST00000592116 1762 ntBASIC17■□□□□ 0.31
HOXC11O43248 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HOXC11O43248 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HOXC11O43248 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17■□□□□ 0.31
HOXC11O43248 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17■□□□□ 0.31
HOXC11O43248 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17■□□□□ 0.31
HOXC11O43248 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17■□□□□ 0.31
HOXC11O43248 MIR4453-201ENST00000584019 89 ntBASIC17■□□□□ 0.31
HOXC11O43248 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17■□□□□ 0.31
HOXC11O43248 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17■□□□□ 0.31
HOXC11O43248 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HOXC11O43248 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HOXC11O43248 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC11O43248 AL671710.1-201ENST00000610245 2349 ntBASIC16.99■□□□□ 0.31
HOXC11O43248 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.99■□□□□ 0.31
HOXC11O43248 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HOXC11O43248 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HOXC11O43248 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms