Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 PAWRP1-201ENST00000451083 565 ntBASIC16.61■□□□□ 0.25
MKS1Q9NXB0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 AC010491.1-201ENST00000563101 2797 ntBASIC16.61■□□□□ 0.25
MKS1Q9NXB0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 KRT18P1-202ENST00000452408 1331 ntBASIC16.61■□□□□ 0.25
MKS1Q9NXB0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MKS1Q9NXB0 AP005117.1-202ENST00000581724 1908 ntBASIC16.6■□□□□ 0.25
MKS1Q9NXB0 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 LINC01144-201ENST00000626198 1710 ntBASIC16.6■□□□□ 0.25
MKS1Q9NXB0 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 AP002383.4-201ENST00000442518 975 ntBASIC16.6■□□□□ 0.25
MKS1Q9NXB0 TSSC2-201ENST00000450217 709 ntBASIC16.6■□□□□ 0.25
MKS1Q9NXB0 TOB2P1-201ENST00000469761 992 ntBASIC16.6■□□□□ 0.25
MKS1Q9NXB0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 AC005332.1-201ENST00000577698 1310 ntBASIC16.6■□□□□ 0.25
MKS1Q9NXB0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.6■□□□□ 0.25
MKS1Q9NXB0 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
MKS1Q9NXB0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.59■□□□□ 0.25
MKS1Q9NXB0 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 AC091167.2-201ENST00000579581 588 ntBASIC16.59■□□□□ 0.25
MKS1Q9NXB0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 AC066615.1-201ENST00000640911 628 ntBASIC16.59■□□□□ 0.25
MKS1Q9NXB0 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MKS1Q9NXB0 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms