Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 REXO1L3P-201ENST00000622202 1288 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 AC107918.4-202ENST00000641623 219 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 AL139011.1-202ENST00000642063 584 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 DOC2GP-204ENST00000639052 2548 ntBASIC17.32■□□□□ 0.36
USP29Q9HBJ7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 PCDH8P1-201ENST00000428983 2773 ntBASIC17.32■□□□□ 0.36
USP29Q9HBJ7 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 AC002310.6-201ENST00000624451 1377 ntBASIC17.32■□□□□ 0.36
USP29Q9HBJ7 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 AC098831.1-202ENST00000438821 336 ntBASIC17.32■□□□□ 0.36
USP29Q9HBJ7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 Z83851.2-201ENST00000609564 659 ntBASIC17.32■□□□□ 0.36
USP29Q9HBJ7 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.32■□□□□ 0.36
USP29Q9HBJ7 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 AC079328.2-201ENST00000561241 3354 ntBASIC17.31■□□□□ 0.36
USP29Q9HBJ7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 AC087163.2-201ENST00000457299 853 ntBASIC17.31■□□□□ 0.36
USP29Q9HBJ7 AC092910.1-201ENST00000482027 1129 ntBASIC17.31■□□□□ 0.36
USP29Q9HBJ7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 MIR4492-201ENST00000581627 80 ntBASIC17.31■□□□□ 0.36
USP29Q9HBJ7 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP29Q9HBJ7 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 PGAM5P1-201ENST00000518923 814 ntBASIC17.3■□□□□ 0.36
USP29Q9HBJ7 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms