Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.92□□□□□ -0.02
MMP28Q9H239 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
MMP28Q9H239 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
MMP28Q9H239 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 SNX18-202ENST00000343017 3140 ntBASIC14.92□□□□□ -0.02
MMP28Q9H239 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 AC093525.9-201ENST00000624961 1746 ntBASIC14.92□□□□□ -0.02
MMP28Q9H239 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
MMP28Q9H239 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MMP28Q9H239 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.92□□□□□ -0.02
MMP28Q9H239 LINC01311-201ENST00000565162 1445 ntBASIC14.92□□□□□ -0.02
MMP28Q9H239 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.92□□□□□ -0.02
MMP28Q9H239 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.91□□□□□ -0.02
MMP28Q9H239 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.91□□□□□ -0.02
MMP28Q9H239 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.91□□□□□ -0.02
MMP28Q9H239 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 AC013268.4-201ENST00000637413 2228 ntBASIC14.91□□□□□ -0.02
MMP28Q9H239 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.91□□□□□ -0.02
MMP28Q9H239 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 PVRIG2P-201ENST00000435460 978 ntBASIC14.91□□□□□ -0.02
MMP28Q9H239 AC092647.4-201ENST00000457211 535 ntBASIC14.91□□□□□ -0.02
MMP28Q9H239 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.91□□□□□ -0.02
MMP28Q9H239 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC14.91□□□□□ -0.02
MMP28Q9H239 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.91□□□□□ -0.02
MMP28Q9H239 AC008687.5-201ENST00000593746 558 ntBASIC14.91□□□□□ -0.02
MMP28Q9H239 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 CICP13-201ENST00000422015 2789 ntBASIC14.91□□□□□ -0.02
MMP28Q9H239 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MMP28Q9H239 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.91□□□□□ -0.02
MMP28Q9H239 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MMP28Q9H239 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MMP28Q9H239 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
MMP28Q9H239 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.9□□□□□ -0.02
MMP28Q9H239 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.9□□□□□ -0.02
MMP28Q9H239 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.9□□□□□ -0.02
MMP28Q9H239 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.9□□□□□ -0.02
MMP28Q9H239 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
MMP28Q9H239 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.9□□□□□ -0.02
MMP28Q9H239 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 AL358472.4-201ENST00000633140 710 ntBASIC14.9□□□□□ -0.02
MMP28Q9H239 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
MMP28Q9H239 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.9□□□□□ -0.02
MMP28Q9H239 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms