Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 MRPL20P1-201ENST00000400819 433 ntBASIC15.12■□□□□ 0.01
USB1Q9BQ65 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 ELK2BP-201ENST00000415014 1224 ntBASIC15.12■□□□□ 0.01
USB1Q9BQ65 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 DNAJB3-201ENST00000446806 729 ntBASIC15.12■□□□□ 0.01
USB1Q9BQ65 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 AC023824.1-201ENST00000562945 2975 ntBASIC15.12■□□□□ 0.01
USB1Q9BQ65 CBR3-AS1-213ENST00000623647 815 ntTSL 5 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.12■□□□□ 0.01
USB1Q9BQ65 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USB1Q9BQ65 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 AC108860.2-201ENST00000562760 2183 ntBASIC15.11■□□□□ 0.01
USB1Q9BQ65 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 KRT18P13-201ENST00000400056 1290 ntBASIC15.11■□□□□ 0.01
USB1Q9BQ65 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 AC140113.2-201ENST00000604370 208 ntBASIC15.11■□□□□ 0.01
USB1Q9BQ65 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 AC010654.1-201ENST00000615722 808 ntBASIC15.11■□□□□ 0.01
USB1Q9BQ65 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 REXO1L11P-201ENST00000620964 1927 ntBASIC15.11■□□□□ 0.01
USB1Q9BQ65 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USB1Q9BQ65 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 PP12613-201ENST00000424958 2230 ntBASIC15.11■□□□□ 0.01
USB1Q9BQ65 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.11■□□□□ 0.01
USB1Q9BQ65 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 ANKRD19P-201ENST00000338192 862 ntBASIC15.1■□□□□ 0.01
USB1Q9BQ65 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 VN2R19P-201ENST00000442399 1052 ntBASIC15.1■□□□□ 0.01
USB1Q9BQ65 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 GPALPP1-207ENST00000611650 899 ntBASIC15.1■□□□□ 0.01
USB1Q9BQ65 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.1■□□□□ 0.01
USB1Q9BQ65 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USB1Q9BQ65 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms