Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 AC211486.1-202ENST00000416371 468 ntBASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 AC211476.1-201ENST00000503899 468 ntBASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 AC096734.2-201ENST00000562054 433 ntBASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 AC007064.4-201ENST00000637740 555 ntBASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 AC092183.1-201ENST00000469884 875 ntBASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 OR7E47P-204ENST00000575924 449 ntBASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 AC134684.3-201ENST00000641758 218 ntBASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP3Q96DZ5 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CLIP3Q96DZ5 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms