Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.46□□□□□ -0.1
CHD3Q12873 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CHD3Q12873 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.46□□□□□ -0.1
CHD3Q12873 AC190387.1-201ENST00000551683 408 ntBASIC14.46□□□□□ -0.1
CHD3Q12873 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.46□□□□□ -0.1
CHD3Q12873 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
CHD3Q12873 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CHD3Q12873 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CHD3Q12873 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CHD3Q12873 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
CHD3Q12873 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.45□□□□□ -0.1
CHD3Q12873 VN2R19P-201ENST00000442399 1052 ntBASIC14.45□□□□□ -0.1
CHD3Q12873 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.45□□□□□ -0.1
CHD3Q12873 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 AC093214.1-201ENST00000511688 1107 ntBASIC14.45□□□□□ -0.1
CHD3Q12873 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.45□□□□□ -0.1
CHD3Q12873 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.45□□□□□ -0.1
CHD3Q12873 AC069262.1-201ENST00000539058 672 ntBASIC14.45□□□□□ -0.1
CHD3Q12873 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.45□□□□□ -0.1
CHD3Q12873 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.45□□□□□ -0.1
CHD3Q12873 AC092902.6-201ENST00000641783 218 ntBASIC14.45□□□□□ -0.1
CHD3Q12873 NFIC-211ENST00000641145 8399 ntBASIC14.45□□□□□ -0.1
CHD3Q12873 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CHD3Q12873 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
CHD3Q12873 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.45□□□□□ -0.1
CHD3Q12873 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
CHD3Q12873 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.45□□□□□ -0.1
CHD3Q12873 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
CHD3Q12873 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CHD3Q12873 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
CHD3Q12873 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CHD3Q12873 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHD3Q12873 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CHD3Q12873 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.44□□□□□ -0.1
CHD3Q12873 AC007274.1-201ENST00000439805 662 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.44□□□□□ -0.1
CHD3Q12873 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.44□□□□□ -0.1
CHD3Q12873 AL031432.2-201ENST00000566714 459 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 AL928711.1-201ENST00000570165 459 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
CHD3Q12873 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.44□□□□□ -0.1
CHD3Q12873 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 AL121761.2-201ENST00000598007 1648 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.44□□□□□ -0.1
CHD3Q12873 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CHD3Q12873 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.44□□□□□ -0.1
CHD3Q12873 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 KRT18P32-201ENST00000424695 1287 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 AC107918.2-201ENST00000530817 355 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.44□□□□□ -0.1
CHD3Q12873 AC099522.2-201ENST00000607001 744 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 Z92544.3-201ENST00000624747 417 ntBASIC14.44□□□□□ -0.1
CHD3Q12873 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.44□□□□□ -0.1
CHD3Q12873 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHD3Q12873 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.43□□□□□ -0.1
CHD3Q12873 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CHD3Q12873 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHD3Q12873 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms