Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 PCED1CP-201ENST00000419887 785 ntBASIC12.95□□□□□ -0.34
HIST1H1AQ02539 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 LINC00265-3P-201ENST00000447588 903 ntBASIC12.95□□□□□ -0.34
HIST1H1AQ02539 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 AC096582.2-201ENST00000510860 516 ntBASIC12.95□□□□□ -0.34
HIST1H1AQ02539 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HIST1H1AQ02539 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC233702.3-201ENST00000578656 1387 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC003669.1-201ENST00000334569 611 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 FAM210CP-201ENST00000445714 574 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 TOB2P1-201ENST00000469761 992 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC124947.2-201ENST00000547118 1133 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC009336.1-201ENST00000608941 1553 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC092053.1-201ENST00000605787 1936 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 AC079328.2-201ENST00000561241 3354 ntBASIC12.94□□□□□ -0.34
HIST1H1AQ02539 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.94□□□□□ -0.34
HIST1H1AQ02539 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 AC105917.1-201ENST00000506637 2539 ntBASIC12.93□□□□□ -0.34
HIST1H1AQ02539 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HIST1H1AQ02539 AL353593.2-201ENST00000602529 1483 ntBASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms