Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.02■□□□□ 0.48
VCPP55072 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.02■□□□□ 0.48
VCPP55072 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 AC236430.1-201ENST00000402231 743 ntBASIC18.02■□□□□ 0.48
VCPP55072 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.02■□□□□ 0.48
VCPP55072 GAPDHP21-201ENST00000450301 1010 ntBASIC18.02■□□□□ 0.48
VCPP55072 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.02■□□□□ 0.48
VCPP55072 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.02■□□□□ 0.48
VCPP55072 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.02■□□□□ 0.48
VCPP55072 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.02■□□□□ 0.48
VCPP55072 RNA5SP421-201ENST00000516864 134 ntBASIC18.02■□□□□ 0.48
VCPP55072 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.02■□□□□ 0.48
VCPP55072 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.02■□□□□ 0.48
VCPP55072 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
VCPP55072 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.02■□□□□ 0.48
VCPP55072 KRT19P2-202ENST00000557173 1012 ntBASIC18.02■□□□□ 0.48
VCPP55072 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.02■□□□□ 0.48
VCPP55072 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.02■□□□□ 0.48
VCPP55072 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VCPP55072 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.02■□□□□ 0.48
VCPP55072 AC004706.3-202ENST00000621574 984 ntBASIC18.02■□□□□ 0.48
VCPP55072 AC010507.1-201ENST00000633895 436 ntBASIC18.02■□□□□ 0.48
VCPP55072 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCPP55072 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VCPP55072 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
VCPP55072 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VCPP55072 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
VCPP55072 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VCPP55072 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
VCPP55072 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
VCPP55072 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
VCPP55072 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
VCPP55072 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.02■□□□□ 0.47
VCPP55072 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.02■□□□□ 0.47
VCPP55072 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 AC093525.9-201ENST00000624961 1746 ntBASIC18.01■□□□□ 0.47
VCPP55072 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 AC009336.1-201ENST00000608941 1553 ntBASIC18.01■□□□□ 0.47
VCPP55072 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
VCPP55072 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.01■□□□□ 0.47
VCPP55072 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.01■□□□□ 0.47
VCPP55072 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
VCPP55072 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.01■□□□□ 0.47
VCPP55072 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.01■□□□□ 0.47
VCPP55072 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.01■□□□□ 0.47
VCPP55072 SIGLEC30P-201ENST00000455569 941 ntBASIC18.01■□□□□ 0.47
VCPP55072 MEIS3P1-201ENST00000495167 958 ntBASIC18.01■□□□□ 0.47
VCPP55072 IGHV3-65-201ENST00000523210 341 ntBASIC18.01■□□□□ 0.47
VCPP55072 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.01■□□□□ 0.47
VCPP55072 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.01■□□□□ 0.47
VCPP55072 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.01■□□□□ 0.47
VCPP55072 AL589182.2-201ENST00000619332 1049 ntBASIC18.01■□□□□ 0.47
VCPP55072 LINC00628-201ENST00000628516 1289 ntBASIC18.01■□□□□ 0.47
VCPP55072 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.01■□□□□ 0.47
VCPP55072 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
VCPP55072 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
VCPP55072 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
VCPP55072 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VCPP55072 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.01■□□□□ 0.47
VCPP55072 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VCPP55072 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
VCPP55072 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18■□□□□ 0.47
VCPP55072 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18■□□□□ 0.47
VCPP55072 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18■□□□□ 0.47
VCPP55072 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 CD63-210ENST00000550776 870 ntTSL 5 BASIC18■□□□□ 0.47
VCPP55072 DUX4L27-201ENST00000554796 1261 ntBASIC18■□□□□ 0.47
VCPP55072 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18■□□□□ 0.47
VCPP55072 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCPP55072 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18■□□□□ 0.47
VCPP55072 AC091812.2-201ENST00000619081 385 ntBASIC18■□□□□ 0.47
VCPP55072 AC105339.1-204ENST00000636249 355 ntBASIC18■□□□□ 0.47
VCPP55072 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18■□□□□ 0.47
VCPP55072 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms