Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
COL4A1P02462 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 EDF1-203ENST00000371649 790 ntTSL 2 BASIC20.27■□□□□ 0.84
COL4A1P02462 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.27■□□□□ 0.84
COL4A1P02462 AL589987.1-201ENST00000453380 819 ntBASIC20.27■□□□□ 0.84
COL4A1P02462 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A1P02462 AC063926.2-201ENST00000623766 1308 ntBASIC20.27■□□□□ 0.84
COL4A1P02462 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL4A1P02462 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL4A1P02462 AL035456.1-201ENST00000456064 1369 ntBASIC20.26■□□□□ 0.83
COL4A1P02462 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 VMO1-203ENST00000416307 712 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A1P02462 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A1P02462 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.26■□□□□ 0.83
COL4A1P02462 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL4A1P02462 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 AL391256.1-201ENST00000443260 1855 ntBASIC20.26■□□□□ 0.83
COL4A1P02462 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
COL4A1P02462 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.26■□□□□ 0.83
COL4A1P02462 AC005915.1-201ENST00000624912 2018 ntBASIC20.26■□□□□ 0.83
COL4A1P02462 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 GPAA1P2-202ENST00000606848 1787 ntBASIC20.26■□□□□ 0.83
COL4A1P02462 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL4A1P02462 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.26■□□□□ 0.83
COL4A1P02462 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.26■□□□□ 0.83
COL4A1P02462 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A1P02462 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
COL4A1P02462 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A1P02462 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A1P02462 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A1P02462 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC20.26■□□□□ 0.83
COL4A1P02462 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A1P02462 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.25■□□□□ 0.83
COL4A1P02462 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL4A1P02462 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.25■□□□□ 0.83
COL4A1P02462 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
COL4A1P02462 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 AC044860.1-202ENST00000559481 777 ntBASIC20.25■□□□□ 0.83
COL4A1P02462 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.25■□□□□ 0.83
COL4A1P02462 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
COL4A1P02462 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A1P02462 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms