Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 LAGE3P1-201ENST00000425356 484 ntBASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 AC021087.4-201ENST00000563761 564 ntBASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 TERC-201ENST00000602385 541 ntBASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 AC004706.3-202ENST00000621574 984 ntBASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM54Q9BYV2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM54Q9BYV2 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TRIM54Q9BYV2 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TRIM54Q9BYV2 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 AC107918.4-202ENST00000641623 219 ntBASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 AF228730.7-201ENST00000641842 219 ntBASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM54Q9BYV2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM54Q9BYV2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms