Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL25A1Q9BXS0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 CNN2P8-201ENST00000421872 913 ntBASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 Z97180.1-201ENST00000445173 988 ntBASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 AC012441.1-201ENST00000446669 685 ntBASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 AL596276.2-201ENST00000447525 331 ntBASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 CTBP2P4-201ENST00000513884 920 ntBASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 RN7SL574P-201ENST00000581512 297 ntBASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 MSTO2P-201ENST00000314835 1709 ntBASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL25A1Q9BXS0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 C2orf27AP3-201ENST00000434123 579 ntBASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 AC009486.1-201ENST00000569860 813 ntBASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 AL354718.3-201ENST00000616414 581 ntBASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 CR382287.1-201ENST00000623954 586 ntBASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 AC233280.19-201ENST00000633223 136 ntBASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL25A1Q9BXS0 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL25A1Q9BXS0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 HOMER2P2-201ENST00000451621 847 ntBASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 RN7SL11P-201ENST00000471305 293 ntBASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
COL25A1Q9BXS0 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms