Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 AL353801.3-201ENST00000609898 542 ntBASIC14.76□□□□□ -0.05
NKX3-1Q99801 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.76□□□□□ -0.05
NKX3-1Q99801 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 AC148477.5-201ENST00000625164 1645 ntBASIC14.76□□□□□ -0.05
NKX3-1Q99801 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 AL596257.1-201ENST00000641463 2694 ntBASIC14.75□□□□□ -0.05
NKX3-1Q99801 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 PTK2-216ENST00000519881 863 ntTSL 3 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 GPR89P-201ENST00000407924 1495 ntBASIC14.75□□□□□ -0.05
NKX3-1Q99801 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
NKX3-1Q99801 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NKX3-1Q99801 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 KLF4P1-201ENST00000412782 1185 ntBASIC14.74□□□□□ -0.05
NKX3-1Q99801 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 AC103564.2-201ENST00000432853 1299 ntBASIC14.74□□□□□ -0.05
NKX3-1Q99801 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 HCG4P8-203ENST00000443049 980 ntBASIC14.74□□□□□ -0.05
NKX3-1Q99801 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 KRT18P56-201ENST00000507275 550 ntBASIC14.74□□□□□ -0.05
NKX3-1Q99801 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 AC116407.4-201ENST00000623319 1061 ntBASIC14.74□□□□□ -0.05
NKX3-1Q99801 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms