Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 AC026691.1-201ENST00000602502 2017 ntBASIC16.21■□□□□ 0.18
VMP1Q96GC9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.21■□□□□ 0.18
VMP1Q96GC9 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
VMP1Q96GC9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VMP1Q96GC9 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.18
VMP1Q96GC9 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.21■□□□□ 0.18
VMP1Q96GC9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 PCDHB17P-201ENST00000539533 2393 ntBASIC16.2■□□□□ 0.18
VMP1Q96GC9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 AC139887.3-201ENST00000568585 713 ntBASIC16.2■□□□□ 0.18
VMP1Q96GC9 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 AL589182.2-201ENST00000619332 1049 ntBASIC16.2■□□□□ 0.18
VMP1Q96GC9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 AC133963.1-201ENST00000504166 1679 ntBASIC16.2■□□□□ 0.18
VMP1Q96GC9 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VMP1Q96GC9 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VMP1Q96GC9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 NCF1C-201ENST00000438382 1427 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AL355312.1-201ENST00000407115 2176 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 AL603756.1-201ENST00000606511 2163 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AC006557.2-201ENST00000592985 1240 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 MIR7706-201ENST00000613747 67 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AC008735.5-201ENST00000623544 497 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AC046185.3-201ENST00000623228 1824 ntBASIC16.19■□□□□ 0.18
VMP1Q96GC9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.19■□□□□ 0.18
VMP1Q96GC9 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VMP1Q96GC9 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms