Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC139530.3-201ENST00000620344 690 ntBASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 IGLL3P-201ENST00000412472 434 ntBASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 OR7E47P-204ENST00000575924 449 ntBASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 AL805961.1-202ENST00000641562 540 ntBASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.09■□□□□ 0.81
CHMP4CQ96CF2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 AL021920.2-201ENST00000624828 1351 ntBASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 RPS8P6-201ENST00000426177 609 ntBASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 AL591424.1-201ENST00000442569 1213 ntBASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CHMP4CQ96CF2 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHMP4CQ96CF2 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 AC011676.5-201ENST00000624864 2660 ntBASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4CQ96CF2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 AC106886.4-201ENST00000623557 2502 ntBASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 YBX2P1-201ENST00000394192 760 ntBASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 MRPL20P1-201ENST00000400819 433 ntBASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 MIR1233-2-201ENST00000408138 82 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms