Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ATG4AQ8WYN0 ME2P1-201ENST00000426028 1970 ntBASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 AC007950.2-201ENST00000615045 2347 ntBASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 FOSL1P1-201ENST00000511041 816 ntBASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.49■□□□□ 0.39
ATG4AQ8WYN0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 AC006277.1-201ENST00000624348 1610 ntBASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 KRT16P4-201ENST00000453883 522 ntBASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4AQ8WYN0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 HLA-J-202ENST00000469281 1241 ntBASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 AC106795.1-205ENST00000512851 1056 ntBASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 NKAPP1-205ENST00000585790 367 ntBASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 AL445228.2-201ENST00000605589 952 ntBASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 AC091076.1-201ENST00000610741 619 ntBASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms