Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
RNF4P78317 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
RNF4P78317 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
RNF4P78317 AP002490.2-201ENST00000524791 560 ntBASIC15.58■□□□□ 0.08
RNF4P78317 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.58■□□□□ 0.08
RNF4P78317 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.58■□□□□ 0.08
RNF4P78317 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
RNF4P78317 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
RNF4P78317 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RNF4P78317 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
RNF4P78317 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
RNF4P78317 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.58■□□□□ 0.08
RNF4P78317 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 AC092919.2-201ENST00000623631 1645 ntBASIC15.57■□□□□ 0.08
RNF4P78317 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RNF4P78317 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.57■□□□□ 0.08
RNF4P78317 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RNF4P78317 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.57■□□□□ 0.08
RNF4P78317 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.57■□□□□ 0.08
RNF4P78317 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.57■□□□□ 0.08
RNF4P78317 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.57■□□□□ 0.08
RNF4P78317 AC140658.5-201ENST00000438532 169 ntBASIC15.57■□□□□ 0.08
RNF4P78317 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.57■□□□□ 0.08
RNF4P78317 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.57■□□□□ 0.08
RNF4P78317 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.57■□□□□ 0.08
RNF4P78317 AC005829.1-201ENST00000570002 483 ntBASIC15.57■□□□□ 0.08
RNF4P78317 AP002472.1-201ENST00000577490 586 ntBASIC15.57■□□□□ 0.08
RNF4P78317 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 CYP2A7P1-201ENST00000595391 815 ntBASIC15.57■□□□□ 0.08
RNF4P78317 AL078644.1-201ENST00000609881 752 ntBASIC15.57■□□□□ 0.08
RNF4P78317 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.57■□□□□ 0.08
RNF4P78317 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RNF4P78317 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 AC006277.1-201ENST00000624348 1610 ntBASIC15.57■□□□□ 0.08
RNF4P78317 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RNF4P78317 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 MST1L-201ENST00000442552 2185 ntBASIC15.56■□□□□ 0.08
RNF4P78317 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RNF4P78317 MIR1233-2-201ENST00000408138 82 ntBASIC15.56■□□□□ 0.08
RNF4P78317 MIR1233-1-201ENST00000408722 82 ntBASIC15.56■□□□□ 0.08
RNF4P78317 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.56■□□□□ 0.08
RNF4P78317 FAM58CP-201ENST00000435741 640 ntBASIC15.56■□□□□ 0.08
RNF4P78317 MKNK2P1-201ENST00000437526 628 ntBASIC15.56■□□□□ 0.08
RNF4P78317 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 ALG1L5P-201ENST00000482043 771 ntBASIC15.56■□□□□ 0.08
RNF4P78317 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.56■□□□□ 0.08
RNF4P78317 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.56■□□□□ 0.08
RNF4P78317 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.56■□□□□ 0.08
RNF4P78317 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.56■□□□□ 0.08
RNF4P78317 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.56■□□□□ 0.08
RNF4P78317 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.56■□□□□ 0.08
RNF4P78317 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
RNF4P78317 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.56■□□□□ 0.08
RNF4P78317 AC013467.2-201ENST00000605472 835 ntBASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms