Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.24■□□□□ 0.67
SMARCA1P28370 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.24■□□□□ 0.67
SMARCA1P28370 AC243562.1-201ENST00000560672 389 ntBASIC19.24■□□□□ 0.67
SMARCA1P28370 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SMARCA1P28370 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.24■□□□□ 0.67
SMARCA1P28370 AL513210.1-201ENST00000629608 234 ntBASIC19.24■□□□□ 0.67
SMARCA1P28370 AC134684.3-201ENST00000641758 218 ntBASIC19.24■□□□□ 0.67
SMARCA1P28370 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SMARCA1P28370 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 AL031731.1-201ENST00000642131 2094 ntBASIC19.24■□□□□ 0.67
SMARCA1P28370 AC106886.4-201ENST00000623557 2502 ntBASIC19.24■□□□□ 0.67
SMARCA1P28370 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 HLA-A-202ENST00000376806 1854 ntBASIC19.24■□□□□ 0.67
SMARCA1P28370 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.24■□□□□ 0.67
SMARCA1P28370 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 AD000864.1-201ENST00000624076 2295 ntBASIC19.23■□□□□ 0.67
SMARCA1P28370 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMARCA1P28370 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
SMARCA1P28370 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.23■□□□□ 0.67
SMARCA1P28370 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.23■□□□□ 0.67
SMARCA1P28370 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMARCA1P28370 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 AC004967.1-201ENST00000453589 447 ntBASIC19.23■□□□□ 0.67
SMARCA1P28370 KRT18P34-201ENST00000488218 1270 ntBASIC19.23■□□□□ 0.67
SMARCA1P28370 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.23■□□□□ 0.67
SMARCA1P28370 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
SMARCA1P28370 AP000344.2-201ENST00000512987 629 ntBASIC19.23■□□□□ 0.67
SMARCA1P28370 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
SMARCA1P28370 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.23■□□□□ 0.67
SMARCA1P28370 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.23■□□□□ 0.67
SMARCA1P28370 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SMARCA1P28370 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMARCA1P28370 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.23■□□□□ 0.67
SMARCA1P28370 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMARCA1P28370 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.22■□□□□ 0.67
SMARCA1P28370 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SMARCA1P28370 GGT4P-201ENST00000623672 1708 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SMARCA1P28370 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.22■□□□□ 0.67
SMARCA1P28370 GPAA1P2-202ENST00000606848 1787 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
SMARCA1P28370 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.22■□□□□ 0.67
SMARCA1P28370 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SMARCA1P28370 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.22■□□□□ 0.67
SMARCA1P28370 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.22■□□□□ 0.67
SMARCA1P28370 AC016027.1-202ENST00000607927 1699 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SMARCA1P28370 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.22■□□□□ 0.67
SMARCA1P28370 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.22■□□□□ 0.67
SMARCA1P28370 LINC01225-203ENST00000563550 1244 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 AL135744.1-201ENST00000565098 629 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.22■□□□□ 0.67
SMARCA1P28370 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.22■□□□□ 0.67
SMARCA1P28370 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.22■□□□□ 0.67
SMARCA1P28370 GPALPP1-207ENST00000611650 899 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 AC084121.4-201ENST00000641598 221 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 AF228730.8-201ENST00000642140 221 ntBASIC19.22■□□□□ 0.67
SMARCA1P28370 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SMARCA1P28370 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMARCA1P28370 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SMARCA1P28370 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms