Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 AC004461.1-201ENST00000412461 403 ntBASIC17.71■□□□□ 0.43
BDNFP23560 TFAMP1-201ENST00000412727 736 ntBASIC17.71■□□□□ 0.43
BDNFP23560 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.71■□□□□ 0.43
BDNFP23560 AP000344.2-201ENST00000512987 629 ntBASIC17.71■□□□□ 0.43
BDNFP23560 KRT8P48-201ENST00000515599 1220 ntBASIC17.71■□□□□ 0.43
BDNFP23560 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.71■□□□□ 0.43
BDNFP23560 AC109635.5-201ENST00000533593 962 ntBASIC17.71■□□□□ 0.43
BDNFP23560 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.71■□□□□ 0.43
BDNFP23560 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.71■□□□□ 0.43
BDNFP23560 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.71■□□□□ 0.43
BDNFP23560 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.71■□□□□ 0.43
BDNFP23560 AC022145.2-201ENST00000598203 171 ntBASIC17.71■□□□□ 0.43
BDNFP23560 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.71■□□□□ 0.43
BDNFP23560 AC026120.1-201ENST00000611536 926 ntBASIC17.71■□□□□ 0.43
BDNFP23560 AL161645.1-201ENST00000622716 1255 ntBASIC17.71■□□□□ 0.43
BDNFP23560 AL513210.1-201ENST00000629608 234 ntBASIC17.71■□□□□ 0.43
BDNFP23560 AC006277.1-201ENST00000624348 1610 ntBASIC17.71■□□□□ 0.43
BDNFP23560 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.42
BDNFP23560 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.42
BDNFP23560 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.71■□□□□ 0.42
BDNFP23560 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.71■□□□□ 0.42
BDNFP23560 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
BDNFP23560 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
BDNFP23560 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 AL671710.1-201ENST00000610245 2349 ntBASIC17.7■□□□□ 0.42
BDNFP23560 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.7■□□□□ 0.42
BDNFP23560 FAM86C2P-203ENST00000528684 1004 ntBASIC17.7■□□□□ 0.42
BDNFP23560 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.7■□□□□ 0.42
BDNFP23560 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 RARRES2P8-201ENST00000566335 367 ntBASIC17.7■□□□□ 0.42
BDNFP23560 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
BDNFP23560 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
BDNFP23560 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.7■□□□□ 0.42
BDNFP23560 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BDNFP23560 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
BDNFP23560 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.69■□□□□ 0.42
BDNFP23560 PMS2P4-201ENST00000412466 1052 ntBASIC17.69■□□□□ 0.42
BDNFP23560 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 SPDYE11-202ENST00000450699 704 ntBASIC17.69■□□□□ 0.42
BDNFP23560 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.69■□□□□ 0.42
BDNFP23560 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
BDNFP23560 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 AL135744.1-201ENST00000565098 629 ntBASIC17.69■□□□□ 0.42
BDNFP23560 SPDYE9P-201ENST00000570642 692 ntBASIC17.69■□□□□ 0.42
BDNFP23560 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.69■□□□□ 0.42
BDNFP23560 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 SPDYE10P-202ENST00000612005 668 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms