Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AL603756.1-201ENST00000606511 2163 ntBASIC20.31■□□□□ 0.84
COL4A1P02462 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A1P02462 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A1P02462 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A1P02462 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A1P02462 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A1P02462 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A1P02462 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.31■□□□□ 0.84
COL4A1P02462 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A1P02462 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.31■□□□□ 0.84
COL4A1P02462 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A1P02462 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A1P02462 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL4A1P02462 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A1P02462 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A1P02462 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL4A1P02462 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 AC087499.5-201ENST00000452760 1342 ntBASIC20.3■□□□□ 0.84
COL4A1P02462 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A1P02462 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 PIN1P1-201ENST00000412108 996 ntBASIC20.3■□□□□ 0.84
COL4A1P02462 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.3■□□□□ 0.84
COL4A1P02462 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL4A1P02462 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A1P02462 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A1P02462 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL4A1P02462 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL4A1P02462 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.3■□□□□ 0.84
COL4A1P02462 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A1P02462 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.29■□□□□ 0.84
COL4A1P02462 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A1P02462 U91328.1-201ENST00000437528 223 ntBASIC20.29■□□□□ 0.84
COL4A1P02462 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.29■□□□□ 0.84
COL4A1P02462 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A1P02462 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 AL589739.1-201ENST00000607720 493 ntBASIC20.29■□□□□ 0.84
COL4A1P02462 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A1P02462 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
COL4A1P02462 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
COL4A1P02462 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A1P02462 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A1P02462 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A1P02462 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
COL4A1P02462 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
COL4A1P02462 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A1P02462 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.28■□□□□ 0.84
COL4A1P02462 GNAQP1-201ENST00000444815 1067 ntBASIC20.28■□□□□ 0.84
COL4A1P02462 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.28■□□□□ 0.84
COL4A1P02462 ZNF890P-202ENST00000530367 1156 ntBASIC20.28■□□□□ 0.84
COL4A1P02462 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A1P02462 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A1P02462 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms