Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 COG4-212ENST00000564653 590 ntTSL 5 BASIC23.28■■□□□ 1.32
NPHP4O75161 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC23.28■■□□□ 1.32
NPHP4O75161 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC23.28■■□□□ 1.32
NPHP4O75161 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC23.28■■□□□ 1.32
NPHP4O75161 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP4O75161 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP4O75161 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP4O75161 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
NPHP4O75161 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP4O75161 LOX-206ENST00000639739 1626 ntTSL 5 BASIC23.28■■□□□ 1.32
NPHP4O75161 PC-204ENST00000524491 1714 ntTSL 2 BASIC23.28■■□□□ 1.32
NPHP4O75161 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP4O75161 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
NPHP4O75161 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP4O75161 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP4O75161 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC23.27■■□□□ 1.32
NPHP4O75161 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC23.27■■□□□ 1.32
NPHP4O75161 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC23.27■■□□□ 1.32
NPHP4O75161 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC23.27■■□□□ 1.32
NPHP4O75161 RPS15-212ENST00000593052 629 ntTSL 2 BASIC23.27■■□□□ 1.32
NPHP4O75161 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC23.27■■□□□ 1.32
NPHP4O75161 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP4O75161 DEK-201ENST00000244776 1441 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP4O75161 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 DPM2-202ENST00000373110 738 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP4O75161 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC23.26■■□□□ 1.31
NPHP4O75161 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP4O75161 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC23.26■■□□□ 1.31
NPHP4O75161 AC093525.9-201ENST00000624961 1746 ntBASIC23.26■■□□□ 1.31
NPHP4O75161 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.26■■□□□ 1.31
NPHP4O75161 AC006538.1-201ENST00000567905 1585 ntBASIC23.26■■□□□ 1.31
NPHP4O75161 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP4O75161 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
NPHP4O75161 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 ACTG1P3-201ENST00000431775 1114 ntBASIC23.25■■□□□ 1.31
NPHP4O75161 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
NPHP4O75161 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC23.25■■□□□ 1.31
NPHP4O75161 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC23.25■■□□□ 1.31
NPHP4O75161 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 RIT1-205ENST00000539040 919 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC23.25■■□□□ 1.31
NPHP4O75161 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC23.25■■□□□ 1.31
NPHP4O75161 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC23.25■■□□□ 1.31
NPHP4O75161 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC23.25■■□□□ 1.31
NPHP4O75161 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
NPHP4O75161 PKD1P6-201ENST00000343738 4769 ntBASIC23.25■■□□□ 1.31
NPHP4O75161 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
NPHP4O75161 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
NPHP4O75161 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
NPHP4O75161 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP4O75161 MPV17-206ENST00000402722 827 ntTSL 3 BASIC23.25■■□□□ 1.31
NPHP4O75161 AC093724.1-201ENST00000448659 1027 ntBASIC23.25■■□□□ 1.31
NPHP4O75161 AP000812.2-201ENST00000538934 718 ntBASIC23.25■■□□□ 1.31
NPHP4O75161 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC23.25■■□□□ 1.31
NPHP4O75161 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC23.25■■□□□ 1.31
NPHP4O75161 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP4O75161 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP4O75161 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP4O75161 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.24■■□□□ 1.31
NPHP4O75161 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP4O75161 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
NPHP4O75161 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC23.24■■□□□ 1.31
NPHP4O75161 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
NPHP4O75161 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
NPHP4O75161 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP4O75161 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC23.24■■□□□ 1.31
NPHP4O75161 AL442647.2-201ENST00000429864 857 ntBASIC23.24■■□□□ 1.31
NPHP4O75161 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC23.24■■□□□ 1.31
NPHP4O75161 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC23.24■■□□□ 1.31
NPHP4O75161 AC106872.11-201ENST00000605838 421 ntBASIC23.24■■□□□ 1.31
NPHP4O75161 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC23.24■■□□□ 1.31
NPHP4O75161 AC009542.2-202ENST00000619004 1067 ntBASIC23.24■■□□□ 1.31
NPHP4O75161 CU634019.7-201ENST00000624153 1185 ntBASIC23.24■■□□□ 1.31
NPHP4O75161 FP236241.2-201ENST00000624906 1185 ntBASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms