Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.39■□□□□ 0.54
CLDN3O15551 OR6D1P-203ENST00000641209 4860 ntBASIC18.39■□□□□ 0.54
CLDN3O15551 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
CLDN3O15551 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.39■□□□□ 0.54
CLDN3O15551 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.39■□□□□ 0.53
CLDN3O15551 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.39■□□□□ 0.53
CLDN3O15551 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.39■□□□□ 0.53
CLDN3O15551 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.39■□□□□ 0.53
CLDN3O15551 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
CLDN3O15551 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN3O15551 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.38■□□□□ 0.53
CLDN3O15551 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.38■□□□□ 0.53
CLDN3O15551 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CLDN3O15551 HMGA1P7-201ENST00000406908 502 ntBASIC18.38■□□□□ 0.53
CLDN3O15551 UPF3AP3-201ENST00000420996 769 ntBASIC18.38■□□□□ 0.53
CLDN3O15551 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.38■□□□□ 0.53
CLDN3O15551 AC010327.4-202ENST00000591484 748 ntBASIC18.38■□□□□ 0.53
CLDN3O15551 AC068137.2-201ENST00000605408 478 ntBASIC18.38■□□□□ 0.53
CLDN3O15551 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLDN3O15551 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CLDN3O15551 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CLDN3O15551 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.38■□□□□ 0.53
CLDN3O15551 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLDN3O15551 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.38■□□□□ 0.53
CLDN3O15551 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLDN3O15551 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN3O15551 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CLDN3O15551 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.37■□□□□ 0.53
CLDN3O15551 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 RPSAP43-201ENST00000402237 625 ntBASIC18.37■□□□□ 0.53
CLDN3O15551 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.37■□□□□ 0.53
CLDN3O15551 GPX1P2-201ENST00000429271 606 ntBASIC18.37■□□□□ 0.53
CLDN3O15551 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.37■□□□□ 0.53
CLDN3O15551 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.37■□□□□ 0.53
CLDN3O15551 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.37■□□□□ 0.53
CLDN3O15551 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.37■□□□□ 0.53
CLDN3O15551 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
CLDN3O15551 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.37■□□□□ 0.53
CLDN3O15551 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CLDN3O15551 MIR4492-201ENST00000581627 80 ntBASIC18.37■□□□□ 0.53
CLDN3O15551 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.37■□□□□ 0.53
CLDN3O15551 C20orf181-201ENST00000623918 480 ntBASIC18.37■□□□□ 0.53
CLDN3O15551 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CLDN3O15551 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.37■□□□□ 0.53
CLDN3O15551 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.37■□□□□ 0.53
CLDN3O15551 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CLDN3O15551 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN3O15551 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLDN3O15551 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
CLDN3O15551 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLDN3O15551 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CLDN3O15551 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CLDN3O15551 AC112482.1-201ENST00000492080 688 ntBASIC18.36■□□□□ 0.53
CLDN3O15551 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms