Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 AC009533.2-201ENST00000543664 586 ntBASIC16.39■□□□□ 0.21
VPS4AQ9UN37 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 AC005336.2-201ENST00000593183 939 ntBASIC16.39■□□□□ 0.21
VPS4AQ9UN37 Z83851.2-201ENST00000609564 659 ntBASIC16.39■□□□□ 0.21
VPS4AQ9UN37 AC134684.3-201ENST00000641758 218 ntBASIC16.39■□□□□ 0.21
VPS4AQ9UN37 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 PCDH8P1-201ENST00000428983 2773 ntBASIC16.39■□□□□ 0.21
VPS4AQ9UN37 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.39■□□□□ 0.21
VPS4AQ9UN37 AC092053.1-201ENST00000605787 1936 ntBASIC16.39■□□□□ 0.21
VPS4AQ9UN37 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4AQ9UN37 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 AL049757.1-201ENST00000616842 1596 ntBASIC16.38■□□□□ 0.21
VPS4AQ9UN37 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 RPS2P1-201ENST00000434010 821 ntBASIC16.38■□□□□ 0.21
VPS4AQ9UN37 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.38■□□□□ 0.21
VPS4AQ9UN37 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 OR7E14P-202ENST00000530490 1290 ntBASIC16.38■□□□□ 0.21
VPS4AQ9UN37 AC034105.1-201ENST00000563488 319 ntBASIC16.38■□□□□ 0.21
VPS4AQ9UN37 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 AC008741.2-201ENST00000612792 3115 ntBASIC16.38■□□□□ 0.21
VPS4AQ9UN37 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4AQ9UN37 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS4AQ9UN37 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms