Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AC211486.1-202ENST00000416371 468 ntBASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AC211476.1-201ENST00000503899 468 ntBASIC16.92■□□□□ 0.3
DKK3Q9UBP4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 MIR3909-201ENST00000579518 119 ntBASIC16.92■□□□□ 0.3
DKK3Q9UBP4 MIR4469-201ENST00000583919 79 ntBASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AP006288.1-201ENST00000446065 395 ntBASIC16.91■□□□□ 0.3
DKK3Q9UBP4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AC109635.5-201ENST00000533593 962 ntBASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AC013467.2-201ENST00000605472 835 ntBASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AL691403.2-201ENST00000618460 490 ntBASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AC134684.3-201ENST00000641758 218 ntBASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AC079781.4-201ENST00000641908 219 ntBASIC16.91■□□□□ 0.3
DKK3Q9UBP4 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DKK3Q9UBP4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.9■□□□□ 0.3
DKK3Q9UBP4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms