Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 AC141586.5-201ENST00000624546 2050 ntBASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 AC108860.2-201ENST00000562760 2183 ntBASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLCF1Q9UBD9 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 PMS2P4-201ENST00000412466 1052 ntBASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 AC092474.2-201ENST00000424288 719 ntBASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPDYE11-202ENST00000450699 704 ntBASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPDYE9P-201ENST00000570642 692 ntBASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPDYE10P-202ENST00000612005 668 ntBASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 SPDYE8P-202ENST00000612377 668 ntBASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.96□□□□□ -0.01
CLCF1Q9UBD9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.96□□□□□ -0.02
CLCF1Q9UBD9 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 TSEN15P1-201ENST00000423257 515 ntBASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 AC023141.5-201ENST00000458585 616 ntBASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 AC243562.1-201ENST00000560672 389 ntBASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLCF1Q9UBD9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms