Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 RN7SL589P-201ENST00000481268 310 ntBASIC17.44■□□□□ 0.38
HPS4Q9NQG7 AC069335.1-201ENST00000489972 472 ntBASIC17.44■□□□□ 0.38
HPS4Q9NQG7 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 AC005412.3-201ENST00000580309 715 ntBASIC17.44■□□□□ 0.38
HPS4Q9NQG7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 AL390955.2-201ENST00000603032 514 ntBASIC17.44■□□□□ 0.38
HPS4Q9NQG7 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 AC009053.2-201ENST00000563701 2365 ntBASIC17.44■□□□□ 0.38
HPS4Q9NQG7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HPS4Q9NQG7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 SLC25A6P5-201ENST00000435663 894 ntBASIC17.43■□□□□ 0.38
HPS4Q9NQG7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 AKAP8P1-201ENST00000434743 1349 ntBASIC17.43■□□□□ 0.38
HPS4Q9NQG7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.43■□□□□ 0.38
HPS4Q9NQG7 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 AL035633.1-201ENST00000406139 838 ntBASIC17.42■□□□□ 0.38
HPS4Q9NQG7 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 KRT18P32-201ENST00000424695 1287 ntBASIC17.42■□□□□ 0.38
HPS4Q9NQG7 GPS2P2-201ENST00000430745 888 ntBASIC17.42■□□□□ 0.38
HPS4Q9NQG7 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 DUX4L27-201ENST00000554796 1261 ntBASIC17.42■□□□□ 0.38
HPS4Q9NQG7 AL009183.1-201ENST00000603760 355 ntBASIC17.42■□□□□ 0.38
HPS4Q9NQG7 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HPS4Q9NQG7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms