Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.35■□□□□ 0.37
CDX2Q99626 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.35■□□□□ 0.37
CDX2Q99626 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.35■□□□□ 0.37
CDX2Q99626 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.34■□□□□ 0.37
CDX2Q99626 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 AC104457.1-201ENST00000401024 814 ntBASIC17.34■□□□□ 0.37
CDX2Q99626 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CDX2Q99626 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.34■□□□□ 0.37
CDX2Q99626 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.34■□□□□ 0.37
CDX2Q99626 AC104306.2-201ENST00000451877 341 ntBASIC17.34■□□□□ 0.37
CDX2Q99626 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.34■□□□□ 0.37
CDX2Q99626 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.34■□□□□ 0.37
CDX2Q99626 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.34■□□□□ 0.37
CDX2Q99626 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.34■□□□□ 0.37
CDX2Q99626 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.34■□□□□ 0.37
CDX2Q99626 KRT18P55-202ENST00000578578 1546 ntBASIC17.34■□□□□ 0.37
CDX2Q99626 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.34■□□□□ 0.37
CDX2Q99626 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.34■□□□□ 0.37
CDX2Q99626 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.34■□□□□ 0.37
CDX2Q99626 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CDX2Q99626 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.34■□□□□ 0.37
CDX2Q99626 MIR7845-201ENST00000618396 99 ntBASIC17.34■□□□□ 0.37
CDX2Q99626 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDX2Q99626 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDX2Q99626 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDX2Q99626 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDX2Q99626 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDX2Q99626 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDX2Q99626 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CDX2Q99626 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CDX2Q99626 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDX2Q99626 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDX2Q99626 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.33■□□□□ 0.37
CDX2Q99626 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CDX2Q99626 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.33■□□□□ 0.36
CDX2Q99626 AC026954.1-201ENST00000429771 1293 ntBASIC17.33■□□□□ 0.36
CDX2Q99626 AC005077.2-201ENST00000449786 690 ntBASIC17.33■□□□□ 0.36
CDX2Q99626 RN7SL399P-201ENST00000471648 279 ntBASIC17.33■□□□□ 0.36
CDX2Q99626 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.33■□□□□ 0.36
CDX2Q99626 FAM86HP-204ENST00000513466 959 ntBASIC17.33■□□□□ 0.36
CDX2Q99626 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.33■□□□□ 0.36
CDX2Q99626 DUX4L45-201ENST00000566406 1057 ntBASIC17.33■□□□□ 0.36
CDX2Q99626 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.33■□□□□ 0.36
CDX2Q99626 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.33■□□□□ 0.36
CDX2Q99626 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDX2Q99626 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.32■□□□□ 0.36
CDX2Q99626 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 AL607033.1-201ENST00000623900 1599 ntBASIC17.32■□□□□ 0.36
CDX2Q99626 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CDX2Q99626 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CDX2Q99626 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 IGF1-203ENST00000392904 761 ntTSL 5 BASIC17.32■□□□□ 0.36
CDX2Q99626 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.32■□□□□ 0.36
CDX2Q99626 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.32■□□□□ 0.36
CDX2Q99626 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.32■□□□□ 0.36
CDX2Q99626 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.32■□□□□ 0.36
CDX2Q99626 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.32■□□□□ 0.36
CDX2Q99626 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.32■□□□□ 0.36
CDX2Q99626 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.32■□□□□ 0.36
CDX2Q99626 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.32■□□□□ 0.36
CDX2Q99626 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX2Q99626 AC074044.1-201ENST00000609673 707 ntBASIC17.32■□□□□ 0.36
CDX2Q99626 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms