Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 AC026396.1-201ENST00000419388 421 ntBASIC18.21■□□□□ 0.51
KRT39Q6A163 HLA-J-202ENST00000469281 1241 ntBASIC18.21■□□□□ 0.51
KRT39Q6A163 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.21■□□□□ 0.51
KRT39Q6A163 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
KRT39Q6A163 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.21■□□□□ 0.51
KRT39Q6A163 Z83851.2-201ENST00000609564 659 ntBASIC18.21■□□□□ 0.51
KRT39Q6A163 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.21■□□□□ 0.51
KRT39Q6A163 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.21■□□□□ 0.51
KRT39Q6A163 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.21■□□□□ 0.51
KRT39Q6A163 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
KRT39Q6A163 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
KRT39Q6A163 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
KRT39Q6A163 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
KRT39Q6A163 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.2■□□□□ 0.5
KRT39Q6A163 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 AC092171.3-201ENST00000610122 2651 ntBASIC18.2■□□□□ 0.5
KRT39Q6A163 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
KRT39Q6A163 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.2■□□□□ 0.5
KRT39Q6A163 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 CRYGEP-201ENST00000412192 528 ntBASIC18.2■□□□□ 0.5
KRT39Q6A163 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.2■□□□□ 0.5
KRT39Q6A163 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 VN2R19P-201ENST00000442399 1052 ntBASIC18.2■□□□□ 0.5
KRT39Q6A163 FAM185BP-201ENST00000443595 716 ntBASIC18.2■□□□□ 0.5
KRT39Q6A163 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.2■□□□□ 0.5
KRT39Q6A163 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
KRT39Q6A163 AC006538.1-201ENST00000567905 1585 ntBASIC18.2■□□□□ 0.5
KRT39Q6A163 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
KRT39Q6A163 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
KRT39Q6A163 PCDHA14-201ENST00000506751 2298 ntBASIC18.2■□□□□ 0.5
KRT39Q6A163 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.2■□□□□ 0.5
KRT39Q6A163 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.2■□□□□ 0.5
KRT39Q6A163 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 AC099398.1-201ENST00000567919 2776 ntBASIC18.19■□□□□ 0.5
KRT39Q6A163 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
KRT39Q6A163 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
KRT39Q6A163 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
KRT39Q6A163 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.19■□□□□ 0.5
KRT39Q6A163 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 HCG4-201ENST00000418983 998 ntBASIC18.19■□□□□ 0.5
KRT39Q6A163 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.19■□□□□ 0.5
KRT39Q6A163 CXCL1P1-201ENST00000502804 216 ntBASIC18.19■□□□□ 0.5
KRT39Q6A163 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.19■□□□□ 0.5
KRT39Q6A163 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.19■□□□□ 0.5
KRT39Q6A163 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
KRT39Q6A163 AC145285.3-201ENST00000564603 959 ntBASIC18.19■□□□□ 0.5
KRT39Q6A163 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.19■□□□□ 0.5
KRT39Q6A163 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 ACTL9-202ENST00000612068 1252 ntBASIC18.19■□□□□ 0.5
KRT39Q6A163 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.19■□□□□ 0.5
KRT39Q6A163 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.19■□□□□ 0.5
KRT39Q6A163 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.19■□□□□ 0.5
KRT39Q6A163 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.19■□□□□ 0.5
KRT39Q6A163 IL9RP2-201ENST00000423948 1312 ntBASIC18.19■□□□□ 0.5
KRT39Q6A163 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
KRT39Q6A163 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.19■□□□□ 0.5
KRT39Q6A163 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.19■□□□□ 0.5
KRT39Q6A163 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
KRT39Q6A163 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
KRT39Q6A163 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.18■□□□□ 0.5
KRT39Q6A163 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
KRT39Q6A163 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 SNX33P1-201ENST00000592116 1762 ntBASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms