Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.64■□□□□ 0.25
SRP54P61011 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SRP54P61011 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SRP54P61011 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.63■□□□□ 0.25
SRP54P61011 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SRP54P61011 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.63■□□□□ 0.25
SRP54P61011 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 AL671277.1-201ENST00000429656 993 ntBASIC16.63■□□□□ 0.25
SRP54P61011 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.63■□□□□ 0.25
SRP54P61011 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.63■□□□□ 0.25
SRP54P61011 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.63■□□□□ 0.25
SRP54P61011 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.63■□□□□ 0.25
SRP54P61011 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.63■□□□□ 0.25
SRP54P61011 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SRP54P61011 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 AC067852.2-201ENST00000590513 2313 ntBASIC16.63■□□□□ 0.25
SRP54P61011 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SRP54P61011 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SRP54P61011 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.62■□□□□ 0.25
SRP54P61011 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.62■□□□□ 0.25
SRP54P61011 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.62■□□□□ 0.25
SRP54P61011 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.62■□□□□ 0.25
SRP54P61011 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
SRP54P61011 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 FRMD8P1-201ENST00000440433 1524 ntBASIC16.62■□□□□ 0.25
SRP54P61011 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.62■□□□□ 0.25
SRP54P61011 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.62■□□□□ 0.25
SRP54P61011 AC004461.1-201ENST00000412461 403 ntBASIC16.62■□□□□ 0.25
SRP54P61011 HCG4-201ENST00000418983 998 ntBASIC16.62■□□□□ 0.25
SRP54P61011 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.62■□□□□ 0.25
SRP54P61011 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SRP54P61011 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SRP54P61011 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.62■□□□□ 0.25
SRP54P61011 FAM86C2P-203ENST00000528684 1004 ntBASIC16.62■□□□□ 0.25
SRP54P61011 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.62■□□□□ 0.25
SRP54P61011 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SRP54P61011 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.62■□□□□ 0.25
SRP54P61011 AC027612.4-201ENST00000605371 583 ntBASIC16.62■□□□□ 0.25
SRP54P61011 AC099522.2-201ENST00000607001 744 ntBASIC16.62■□□□□ 0.25
SRP54P61011 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.62■□□□□ 0.25
SRP54P61011 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.62■□□□□ 0.25
SRP54P61011 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
SRP54P61011 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.62■□□□□ 0.25
SRP54P61011 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 AC099398.1-201ENST00000567919 2776 ntBASIC16.62■□□□□ 0.25
SRP54P61011 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SRP54P61011 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SRP54P61011 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SRP54P61011 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SRP54P61011 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.61■□□□□ 0.25
SRP54P61011 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 CROCCP2-202ENST00000412962 2773 ntBASIC16.61■□□□□ 0.25
SRP54P61011 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
SRP54P61011 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms