Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CXCL12P48061 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CXCL12P48061 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.64■□□□□ 0.26
CXCL12P48061 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.64■□□□□ 0.26
CXCL12P48061 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CXCL12P48061 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CXCL12P48061 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.64■□□□□ 0.25
CXCL12P48061 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.64■□□□□ 0.25
CXCL12P48061 AC073439.1-201ENST00000624121 1774 ntBASIC16.64■□□□□ 0.25
CXCL12P48061 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CXCL12P48061 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 MIR658-201ENST00000385210 100 ntBASIC16.64■□□□□ 0.25
CXCL12P48061 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CXCL12P48061 AC079776.1-201ENST00000401540 1152 ntBASIC16.64■□□□□ 0.25
CXCL12P48061 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.64■□□□□ 0.25
CXCL12P48061 AC112492.5-201ENST00000421897 457 ntBASIC16.64■□□□□ 0.25
CXCL12P48061 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.64■□□□□ 0.25
CXCL12P48061 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.64■□□□□ 0.25
CXCL12P48061 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.64■□□□□ 0.25
CXCL12P48061 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CXCL12P48061 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.64■□□□□ 0.25
CXCL12P48061 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
CXCL12P48061 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.64■□□□□ 0.25
CXCL12P48061 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
CXCL12P48061 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.64■□□□□ 0.25
CXCL12P48061 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL12P48061 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.64■□□□□ 0.25
CXCL12P48061 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CXCL12P48061 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.63■□□□□ 0.25
CXCL12P48061 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.63■□□□□ 0.25
CXCL12P48061 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.63■□□□□ 0.25
CXCL12P48061 AC016396.2-201ENST00000562575 1417 ntBASIC16.63■□□□□ 0.25
CXCL12P48061 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.63■□□□□ 0.25
CXCL12P48061 AL080243.2-201ENST00000418783 582 ntBASIC16.63■□□□□ 0.25
CXCL12P48061 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.63■□□□□ 0.25
CXCL12P48061 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.63■□□□□ 0.25
CXCL12P48061 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.63■□□□□ 0.25
CXCL12P48061 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CXCL12P48061 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.63■□□□□ 0.25
CXCL12P48061 BANF1P1-201ENST00000553684 263 ntBASIC16.63■□□□□ 0.25
CXCL12P48061 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.63■□□□□ 0.25
CXCL12P48061 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.63■□□□□ 0.25
CXCL12P48061 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.63■□□□□ 0.25
CXCL12P48061 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.63■□□□□ 0.25
CXCL12P48061 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 TNXA-203ENST00000507684 2038 ntBASIC16.63■□□□□ 0.25
CXCL12P48061 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.63■□□□□ 0.25
CXCL12P48061 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.63■□□□□ 0.25
CXCL12P48061 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CXCL12P48061 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL12P48061 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL12P48061 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL12P48061 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL12P48061 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CXCL12P48061 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.62■□□□□ 0.25
CXCL12P48061 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.62■□□□□ 0.25
CXCL12P48061 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CXCL12P48061 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.62■□□□□ 0.25
CXCL12P48061 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CXCL12P48061 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.62■□□□□ 0.25
CXCL12P48061 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
CXCL12P48061 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.62■□□□□ 0.25
CXCL12P48061 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.62■□□□□ 0.25
CXCL12P48061 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
CXCL12P48061 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.62■□□□□ 0.25
CXCL12P48061 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL12P48061 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.62■□□□□ 0.25
CXCL12P48061 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL12P48061 AL023806.1-201ENST00000603994 1649 ntBASIC16.62■□□□□ 0.25
CXCL12P48061 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms